Rroxscaffold_1G00056680

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
78550286 .. 78553174
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056680.1

Sequence Viewer

Length: 423 bp
ATGGCCTTAGGAAATAGCACCAACCCGAGGAGTATTGATCTTGGTGGTAATAGATTTACCGGAAACCTACCTTCATGGATAGGAACAAATGTATCCAAGGTGTTTATCTTACGGCTGCCATCCAATTCTCTAAGTGGACATATTCCCCAGCAATTGTGCAATCTTGACCAACTTCACCTCCTAGATCTTGGTCATAACCACCTCTCGTGTACTATACCAACGTGTTTGAATAATATGACTGCTCTAACGGATCTCACCGCCGCCTCTACGTGCCTCGCCGCCGTGCAAGGCCACCACGACAGTGCGCAAGGACCATGCGAAGCCAATGGAAGAAGTTTGGTGAGGATTGGTGGCCGAAGGAGGAAGAAATGGCTTGGAGAAGGTAAAGGGCGATTTCCGGCTTTCGGGAGAATTTCTGCATAA

Protein Analysis

140

Amino Acids

14.98

Weight (kDa)

9.82

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
AciI CCGC 3 cut(s) 258, 261, 279
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 27, 404
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 1 cut(s) 229
AleI CACNNNNGTG 1 cut(s) 300
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 3 cut(s) 3, 289, 352
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 411
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 167, 247, 352
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 7
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BauI CACGAG 1 cut(s) 205
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 127
BceAI ACGGC 2 cut(s) 128, 266
BciVI GTATCC 1 cut(s) 103
BfaI CTAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 103
BglII AGATCT 1 cut(s) 184
BisI GCNGC 3 cut(s) 116, 261, 279
BlsI GCNGC 3 cut(s) 117, 262, 280
Bme18I GGWCC 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 26, 96
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 404
Bse21I CCTNAGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 26, 96
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 27, 404
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 3 cut(s) 5, 291, 354
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 60, 398
BslI CCNNNNNNNGG 2 cut(s) 27, 404
BsnI GGCC 3 cut(s) 5, 291, 354
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 3 cut(s) 37, 184, 250
BspACI CCGC 3 cut(s) 258, 261, 279
BspANI GGCC 3 cut(s) 5, 291, 354
BspPI GGATC 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 26, 96
BssMI GATC 3 cut(s) 37, 184, 250
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 7, 131
BstF5I GGATG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 3 cut(s) 40, 187, 253
BstMBI GATC 3 cut(s) 37, 184, 250
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 2 cut(s) 184, 250
BstYI RGATCY 2 cut(s) 184, 250
Bsu36I CCTNAGG 1 cut(s) 7
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 3 cut(s) 5, 291, 354
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 75, 315
CviJI RGCY 7 cut(s) 5, 115, 291, 323, 354, 373, 401
CviKI_1 RGCY 7 cut(s) 5, 115, 291, 323, 354, 373, 401
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 7, 131
DpnI GATC 3 cut(s) 39, 186, 252
DpnII GATC 3 cut(s) 37, 184, 250
EaeI YGGCCR 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 78, 318
FaiI YATR 7 cut(s) 76, 141, 195, 215, 236, 316, 421
FatI CATG 2 cut(s) 74, 314
Fnu4HI GCNGC 3 cut(s) 116, 261, 279
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 116, 261, 279
FspBI CTAG 1 cut(s) 182
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 116, 261, 279
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 3 cut(s) 5, 291, 354
HapII CCGG 2 cut(s) 60, 398
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 78, 318
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HpaII CCGG 2 cut(s) 60, 398
HphI GGTGA 3 cut(s) 167, 247, 352
Hpy166II GTNNAC 2 cut(s) 137, 210
Hpy188III TCNNGA 2 cut(s) 164, 406
Hpy8I GTNNAC 2 cut(s) 137, 210
HpyAV CCTTC 3 cut(s) 81, 351, 374
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 2 cut(s) 221, 269
HpyCH4V TGCA 3 cut(s) 159, 286, 419
HpyF3I CTNAG 2 cut(s) 7, 131
HpySE526I ACGT 2 cut(s) 221, 269
Hsp92II CATG 2 cut(s) 78, 318
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 37, 184, 250
LpnPI CCDG 3 cut(s) 73, 161, 411
Lsp1109I GCAGC 1 cut(s) 102
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 221, 269
MalI GATC 3 cut(s) 39, 186, 252
MboI GATC 3 cut(s) 37, 184, 250
MboII GAAGA 2 cut(s) 342, 376
MfeI CAATTG 1 cut(s) 152
MflI RGATCY 2 cut(s) 184, 250
MluCI AATT 3 cut(s) 124, 152, 411
MnlI CCTC 7 cut(s) 21, 188, 212, 274, 284, 336, 354
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 2 cut(s) 60, 398
MunI CAATTG 1 cut(s) 152
NdeII GATC 3 cut(s) 37, 184, 250
NlaIII CATG 2 cut(s) 78, 318
NsbI TGCGCA 1 cut(s) 306
OliI CACNNNNGTG 1 cut(s) 300
PkrI GCNGC 3 cut(s) 117, 262, 280
Ppu21I YACGTR 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 2 cut(s) 184, 250
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 300
SatI GCNGC 3 cut(s) 116, 261, 279
Sau3AI GATC 3 cut(s) 37, 184, 250
Sau96I GGNCC 1 cut(s) 311
SetI ASST 8 cut(s) 69, 73, 102, 180, 204, 224, 272, 385
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 3 cut(s) 124, 152, 411
SsiI CCGC 3 cut(s) 258, 261, 279
SspMI CTAG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 2 cut(s) 224, 272
TasI AATT 3 cut(s) 124, 152, 411
TatI WGTACW 1 cut(s) 209
TauI GCSGC 2 cut(s) 263, 281
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 411
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.