Rh1AG253400

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
46944528 .. 46953216
8689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG253400.1

Sequence Viewer

Length: 1083 bp
ATGAATGGAACTATTCCAGAAAGCATCGGACAACTTAGAGAGTTAAAGAACTTGTTCCTCCACGGTTGTTCATGGGAAGGCTTTATATCTGAAAATCATTTTCAGAACACTAGCAGATTGGATTCGTTTTATTTATCCAGCGAGGCATTTAACTCTTTGGTTTTCAACGTCAGTCATGACTGGATTCCTATCTTCAATCTTACAAGTCTTCAAATCATTGATTGTAAACTAATGGATACTGCATTTCCTGTGTGGCTCAGAAGTCAAAAATTCCTCATTTACTTAACTCTTGAGAGAGTCGGAATTTCAGATACAATACCCGATTGGTTTTGGAGATTCTCACCATTCCTTGATGGTGTGATATTATCTCATAACCAGTTAAGAGGAAACCTTCCCAAGTCTGTGAGTCCTCCTCTTCAAAACGTTATTTTGAAAAATAACAGTCAGGTAGGTTCCCTTCCACTTTGGCCAAATGTAAAACAACTAAGCTTGGCAAGCAATAGATTTTCAGGGCCTATTCCTTTGAACATTGGCCACGAGATGTCAAAGTTGGTGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAAATATTCCTAGGGATTGGACGGGTTCGCTAGATTTGAAGATCATAGACTTTTCAAATAACAAGCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCAAATGGTTGAGATTAAGCAACAGCAATCTTTCTGGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTGACAGGAAACAACTTTTCCGGCACCATACCAGATTGTATTGGAGACAACCTTCATACATTGTCTTATTTACTTCTAGGAGCCAACAAGTTCACCGGAAATATTCCTCATCAATTATGCGATCTCTCCTCTCTTCAGAAATGCTTTGTGGGAGATTGGGCATGCTGGTCCTATGTGGGTTTGAGAAAGCTAACTAACCATCAAAAGAGGAGGCAGTCATTTCTTTCTTACGTCTTACCATCAAAAGAGGAGGCAGTCATTTCTTTCTTGCGTCTTTGGTTCTTGGATTTGCCTGTGTAA

Protein Analysis

360

Amino Acids

40.76

Weight (kDa)

8.09

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 806
AclI AACGTT 1 cut(s) 423
AcoI YGGCCR 2 cut(s) 467, 532
AcsI RAATTY 2 cut(s) 269, 303
AcuI CTGAAG 1 cut(s) 902
AgsI TTSAA 8 cut(s) 166, 196, 212, 419, 433, 526, 625, 642
AluBI AGCT 4 cut(s) 489, 652, 672, 973
AluI AGCT 4 cut(s) 489, 652, 672, 973
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 1 cut(s) 822
AoxI GGCC 3 cut(s) 467, 512, 532
ApoI RAATTY 2 cut(s) 269, 303
Asp700I GAANNNNTTC 2 cut(s) 53, 578
AspA2I CCTAGG 1 cut(s) 596
AspS9I GGNCC 2 cut(s) 512, 951
AsuHPI GGTGA 3 cut(s) 333, 671, 868
AvaII GGWCC 1 cut(s) 951
AvrII CCTAGG 1 cut(s) 596
BalI TGGCCA 2 cut(s) 469, 534
BanI GGYRCC 1 cut(s) 806
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 683
BccI CCATC 4 cut(s) 347, 700, 990, 1030
BciVI GTATCC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 822
BfaI CTAG 4 cut(s) 111, 597, 617, 860
BfuI GTATCC 1 cut(s) 229
BlnI CCTAGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 951
BmgT120I GGNCC 2 cut(s) 512, 951
BmiI GGNNCC 3 cut(s) 454, 808, 865
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpuEI CTTGAG 3 cut(s) 311, 553, 761
BsaBI GATNNNNATC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 61, 596
BsaWI WCCGGW 1 cut(s) 878
Bse1I ACTGG 2 cut(s) 185, 376
Bse8I GATNNNNATC 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 61, 596
BseJI GATNNNNATC 1 cut(s) 188
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 185, 376
BseRI GAGGAG 4 cut(s) 402, 901, 1006, 1046
BsgI GTGCAG 1 cut(s) 759
BshFI GGCC 3 cut(s) 469, 514, 534
BshNI GGYRCC 1 cut(s) 806
BsiHKAI GWGCWC 1 cut(s) 683
BsiSI CCGG 2 cut(s) 804, 879
BsmAI GTCTC 1 cut(s) 822
BsnI GGCC 3 cut(s) 469, 514, 534
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 4 cut(s) 562, 627, 781, 904
BspANI GGCC 3 cut(s) 469, 514, 534
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 3 cut(s) 454, 808, 865
BspT107I GGYRCC 1 cut(s) 806
BsrI ACTGG 2 cut(s) 185, 376
BssECI CCNNGG 2 cut(s) 61, 596
BssMI GATC 4 cut(s) 562, 627, 781, 904
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 65, 443
Bst6I CTCTTC 2 cut(s) 420, 921
BstC8I GCNNGC 2 cut(s) 496, 946
BstDEI CTNAG 3 cut(s) 35, 257, 485
BstDSI CCRYGG 1 cut(s) 61
BstKTI GATC 4 cut(s) 565, 630, 784, 907
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 4 cut(s) 562, 627, 781, 904
BstMWI GCNNNNNNNGC 2 cut(s) 495, 678
BstNSI RCATGY 1 cut(s) 948
BstV2I GAAGAC 1 cut(s) 200
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 3 cut(s) 469, 514, 534
BtgI CCRYGG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 496, 946
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 512, 951
CseI GACGC 1 cut(s) 1043
CviAII CATG 4 cut(s) 72, 176, 676, 945
DdeI CTNAG 3 cut(s) 35, 257, 485
DpnI GATC 4 cut(s) 564, 629, 783, 906
DpnII GATC 4 cut(s) 562, 627, 781, 904
EaeI YGGCCR 2 cut(s) 467, 532
Eam1104I CTCTTC 2 cut(s) 420, 921
EarI CTCTTC 2 cut(s) 420, 921
Eco130I CCWWGG 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 951
Eco57I CTGAAG 1 cut(s) 902
EcoO109I RGGNCCY 1 cut(s) 512
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 4 cut(s) 75, 179, 679, 948
FatI CATG 4 cut(s) 71, 175, 675, 944
FspBI CTAG 4 cut(s) 111, 597, 617, 860
HaeIII GGCC 3 cut(s) 469, 514, 534
HapII CCGG 2 cut(s) 804, 879
HgaI GACGC 1 cut(s) 1043
Hin1II CATG 4 cut(s) 75, 179, 679, 948
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 7 cut(s) 122, 184, 297, 336, 406, 736, 743
HpaII CCGG 2 cut(s) 804, 879
HphI GGTGA 3 cut(s) 333, 671, 868
Hpy166II GTNNAC 2 cut(s) 227, 876
Hpy188I TCNGA 8 cut(s) 29, 91, 105, 260, 302, 310, 786, 921
Hpy188III TCNNGA 6 cut(s) 17, 176, 290, 560, 585, 740
Hpy8I GTNNAC 2 cut(s) 227, 876
HpyAV CCTTC 4 cut(s) 71, 401, 467, 845
HpyCH4III ACNGT 2 cut(s) 65, 443
HpyCH4IV ACGT 3 cut(s) 168, 423, 1014
HpyCH4V TGCA 4 cut(s) 242, 754, 762, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 678
HpyF3I CTNAG 3 cut(s) 35, 257, 485
HpySE526I ACGT 3 cut(s) 168, 423, 1014
Hsp92II CATG 4 cut(s) 75, 179, 679, 948
Kzo9I GATC 4 cut(s) 562, 627, 781, 904
LmnI GCTCC 3 cut(s) 677, 686, 863
LweI GCATC 1 cut(s) 33
MaeI CTAG 4 cut(s) 111, 597, 617, 860
MaeII ACGT 3 cut(s) 168, 423, 1014
MalI GATC 4 cut(s) 564, 629, 783, 906
MboI GATC 4 cut(s) 562, 627, 781, 904
MboII GAAGA 5 cut(s) 184, 200, 407, 637, 908
MhlI GDGCHC 1 cut(s) 683
MlsI TGGCCA 2 cut(s) 469, 534
MluCI AATT 4 cut(s) 269, 303, 574, 896
MluNI TGGCCA 2 cut(s) 469, 534
MlyI GAGTC 3 cut(s) 306, 415, 752
MmeI TCCRAC 1 cut(s) 280
Mox20I TGGCCA 2 cut(s) 469, 534
MroXI GAANNNNTTC 2 cut(s) 53, 578
MscI TGGCCA 2 cut(s) 469, 534
MseI TTAA 5 cut(s) 44, 150, 284, 380, 713
MslI CAYNNNNRTG 1 cut(s) 700
Msp20I TGGCCA 2 cut(s) 469, 534
MspI CCGG 2 cut(s) 804, 879
MwoI GCNNNNNNNGC 2 cut(s) 495, 678
NdeII GATC 4 cut(s) 562, 627, 781, 904
NlaIII CATG 4 cut(s) 75, 179, 679, 948
NlaIV GGNNCC 3 cut(s) 454, 808, 865
NspI RCATGY 1 cut(s) 948
PaeI GCATGC 1 cut(s) 948
PagI TCATGA 1 cut(s) 175
PdmI GAANNNNTTC 2 cut(s) 53, 578
PfeI GAWTC 4 cut(s) 122, 184, 336, 736
PleI GAGTC 3 cut(s) 305, 414, 751
PpsI GAGTC 3 cut(s) 305, 414, 751
Psp1406I AACGTT 1 cut(s) 423
PspN4I GGNNCC 3 cut(s) 454, 808, 865
PspPI GGNCC 2 cut(s) 512, 951
RseI CAYNNNNRTG 1 cut(s) 700
SaqAI TTAA 5 cut(s) 44, 150, 284, 380, 713
Sau3AI GATC 4 cut(s) 562, 627, 781, 904
Sau96I GGNCC 2 cut(s) 512, 951
SchI GAGTC 3 cut(s) 306, 415, 752
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 1 cut(s) 951
SmiMI CAYNNNNRTG 1 cut(s) 700
SmlI CTYRAG 3 cut(s) 290, 568, 740
SmoI CTYRAG 3 cut(s) 290, 568, 740
SphI GCATGC 1 cut(s) 948
Sse9I AATT 4 cut(s) 269, 303, 574, 896
SspI AATATT 2 cut(s) 592, 886
SspMI CTAG 4 cut(s) 111, 597, 617, 860
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 65, 443
TaiI ACGT 3 cut(s) 171, 426, 1017
TasI AATT 4 cut(s) 269, 303, 574, 896
TfiI GAWTC 4 cut(s) 122, 184, 336, 736
Tru1I TTAA 5 cut(s) 44, 150, 284, 380, 713
Tru9I TTAA 5 cut(s) 44, 150, 284, 380, 713
TspDTI ATGAA 3 cut(s) 17, 60, 827
VpaK11BI GGWCC 1 cut(s) 951
XapI RAATTY 2 cut(s) 269, 303
XceI RCATGY 1 cut(s) 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XmaJI CCTAGG 1 cut(s) 596
XmnI GAANNNNTTC 2 cut(s) 53, 578
XspI CTAG 4 cut(s) 111, 597, 617, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.