Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

47268984 .. 47270204

Gene Structure 1221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACAACAGTAGATGGCTTGCTTGGAAACAGCTGGGTTAGGAACTTGACGTTCCCTTTGGTTGTTTATGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGCTGATTTCATAGGACTCATTAAAAAGTACCTGTCAAGTAATAATCTATGGGGAGAAATACCAGAAGAGGTCAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATGAGTTAGAAGCACTTGACCTCTCTAGTAACCATCTTTGGGGTTTAATTCCTTCAAGCATGAACTCCATGACTTCATTAAACAAATTGAATTTGTCATTCAGCAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCACACCTTCGATCCAACCTCATTTGAAGGAAACTCCGGACTTTGTGGACCTCCATTGCCAACCCAATGCAGCTCAGCATCCCATAATGATCCAGCTGCAAAGGTTGAGGAAGATGAAGAAGATAAGTATGGAAAATTATGGTCCTATGCAAGCACAGCGTTGGGCCACAACAATTTGCCAATCTCGACTACGACTTTTCACGAGATTTCCAATGTTGCTTGCATCAAGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

216

Amino Acids

23.66

Weight (kDa)

5.07

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	49 - 124	6e-08	Leucine-rich repeat region
LRR_8	PF13855	50 - 104	3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	449
AclWI	GGATC	3 cut(s)	65, 419, 497
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	220, 330, 364, 440
AluBI	AGCT	5 cut(s)	33, 216, 270, 486, 509
AluI	AGCT	5 cut(s)	33, 216, 270, 486, 509
AlwI	GGATC	3 cut(s)	65, 419, 497
Aor13HI	TCCGGA	1 cut(s)	449
AoxI	GGCC	2 cut(s)	389, 577
ApeKI	GCWGC	2 cut(s)	483, 509
ApoI	RAATTY	1 cut(s)	364
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AspS9I	GGNCC	4 cut(s)	389, 461, 555, 577
AvaII	GGWCC	2 cut(s)	461, 555
BauI	CACGAG	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	495, 496
BccI	CCATC	3 cut(s)	8, 315, 406
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	484, 510
BlpI	GCTNAGC	1 cut(s)	487
BlsI	GCNGC	2 cut(s)	485, 511
Bme18I	GGWCC	2 cut(s)	461, 555
BmgT120I	GGNCC	4 cut(s)	389, 461, 555, 577
BmsI	GCATC	2 cut(s)	500, 645
Bpu1102I	GCTNAGC	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	449
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	501
BseXI	GCAGC	2 cut(s)	495, 496
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	2 cut(s)	391, 579
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	313
BsnI	GGCC	2 cut(s)	391, 579
Bsp13I	TCCGGA	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	70, 424, 502
Bsp1720I	GCTNAGC	1 cut(s)	487
BspANI	GGCC	2 cut(s)	391, 579
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	449
BspPI	GGATC	3 cut(s)	65, 419, 497
BsrDI	GCAATG	1 cut(s)	467
BssMI	GATC	3 cut(s)	70, 424, 502
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	20, 565, 634
BstDEI	CTNAG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	3 cut(s)	73, 427, 505
BstMBI	GATC	3 cut(s)	70, 424, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	495, 496
BsuRI	GGCC	2 cut(s)	391, 579
BtsCI	GGATG	1 cut(s)	491
Cac8I	GCNNGC	3 cut(s)	20, 565, 634
Cfr13I	GGNCC	4 cut(s)	389, 461, 555, 577
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	202, 275, 334, 343
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	3 cut(s)	72, 426, 504
DpnII	GATC	3 cut(s)	70, 424, 502
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	461, 555
EcoT22I	ATGCAT	1 cut(s)	81
FaeI	CATG	4 cut(s)	205, 278, 337, 346
FatI	CATG	4 cut(s)	201, 274, 333, 342
Fnu4HI	GCNGC	2 cut(s)	484, 510
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	2 cut(s)	484, 510
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	484, 510
GsaI	CCCAGC	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	391, 579
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	4 cut(s)	205, 278, 337, 346
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	4 cut(s)	450, 598, 614, 640
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	336, 430, 434
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	5 cut(s)	79, 483, 512, 563, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	1 cut(s)	487
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	205, 278, 337, 346
Kpn2I	TCCGGA	1 cut(s)	449
Kzo9I	GATC	3 cut(s)	70, 424, 502
LpnPI	CCDG	8 cut(s)	19, 164, 195, 228, 267, 372, 463, 519
Lsp1109I	GCAGC	2 cut(s)	495, 496
LweI	GCATC	2 cut(s)	500, 645
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	72, 426, 504
MboI	GATC	3 cut(s)	70, 424, 502
MboII	GAAGA	4 cut(s)	197, 536, 542, 545
MluCI	AATT	6 cut(s)	321, 359, 364, 410, 548, 586
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	6 cut(s)	181, 250, 305, 442, 474, 514
Mph1103I	ATGCAT	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	449
MseI	TTAA	4 cut(s)	89, 141, 320, 353
MspA1I	CMGCKG	2 cut(s)	33, 509
MspI	CCGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	569
NdeII	GATC	3 cut(s)	70, 424, 502
NlaIII	CATG	4 cut(s)	205, 278, 337, 346
NsiI	ATGCAT	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	485, 511
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	33
PspPI	GGNCC	4 cut(s)	389, 461, 555, 577
PvuII	CAGCTG	2 cut(s)	33, 509
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	89, 141, 320, 353
SatI	GCNGC	2 cut(s)	484, 510
Sau3AI	GATC	3 cut(s)	70, 424, 502
Sau96I	GGNCC	4 cut(s)	389, 461, 555, 577
SchI	GAGTC	1 cut(s)	129
SfaNI	GCATC	2 cut(s)	500, 645
SinI	GGWCC	2 cut(s)	461, 555
Sse9I	AATT	6 cut(s)	321, 359, 364, 410, 548, 586
SspMI	CTAG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	84, 423, 599
TasI	AATT	6 cut(s)	321, 359, 364, 410, 548, 586
Tru1I	TTAA	4 cut(s)	89, 141, 320, 353
Tru9I	TTAA	4 cut(s)	89, 141, 320, 353
TseI	GCWGC	2 cut(s)	483, 509
TspDTI	ATGAA	5 cut(s)	118, 126, 339, 350, 543
VpaK11BI	GGWCC	2 cut(s)	461, 555
XapI	RAATTY	1 cut(s)	364
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.