Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

39097429 .. 39098670

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTAGCCACAAAACTTTCATTCATCTTCTTCTTCTTCTTGTTCATTTTTTCCTTCAAGCCACAGCTTTTGCAAACTCTAGGACTGCTAATCAGAGTTTCAGTGCGGCTTGCATTGAGGAGGAGAGGAAGGCCCTCCTTGAATTCAAAAAAGGCCCTTTTCAAGGGCTTCCTTCTTGGGTTGGGGAAGACTGCTGCAACTGGTATGGCATAGCCTGCAGTAACCAAACAGGCCATGTCATCTCGGTAGACCTCTCCTTGTATGCACCCTCTGTTCCAGTTCCGAAATCAATTGGAAACCTGTCACATTTGCACATCTTAAACCTCTCAGGATATGCCTTCTCCGGTCCACTGCCAACGTCAATAGGAAACCTGCCACATTTGCAGACCTTGGTGCTCTCAGAAACTGCAATCTCTGGTCCACTTCCGGCGTCAATAGGAAATCTGTCACATTTGCAGACCTTGGTGCTCTCAAGAAATCGAATCTCTGGTCCACTTCCGAAATCAATTGGAAACCTGTCACATTTGCAGATCCTAACCCTCTCAGGACATGCCTTCTCCGGTCCACTGCCAACGTCAATAGGAAACCTGCCACATTTGCAGACCTTGTTGCTGTCAGGAACTACAATCTCTGGTCCAATTCCGAAGTCAATAGGAAACCTGCCACATTTGCAGACCTTGGTGCTCTCAGAAACTGCAATCTCTGGTCCAATTCCCAAGTCAATAGGAAACCTGCCACATTTGCAGACCTTGGTGCTCTCAGAAACTGCAATCTCTGGTCCAATTCCCAAGTCAATAGGAAACCTGTCACATTTGCAGACCTTTGTGCTCTCAGGCAATGCAATCTCTGGTCAACTTCCTACTTCTATAGGAAATATGGACCTCTCAATCAATGTAATTTCTGGTCCAATTCCGAAGTCAATAGGAAGCCTCCCACGGTTGCAGATACTTCACCTCTCACGCAATACAATCTCCGGTCCCCTTCCGATGTCTATAGGCAATTTGTCACATTTGCAGGCTCTGGACCTCACAGAAAATGCAATCTCTGGTCCACTTCCCACATCAATAGGAGATCTGGCAAATTTACGCATGCTGGCCCTTTCTGACAACTTAATCTCCAGTCCACTACCCACGTCAATAGGAAATCTGTCATGTTTACAGATCCTGGACCTTGCTGGAAACCCAAAATTGAATGGAACCATTCCAGAAAGTATTGGACAACTTAGCGAATTGACAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

413

Amino Acids

43.25

Weight (kDa)

7.28

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 74	2.5e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	96 - 181	1.6e-15	Leucine-rich repeat region
LRR_8	PF13855	126 - 183	1.5e-07	Leucine rich repeat
LRR_14	PF23598	168 - 251	3.4e-13	Leucine-rich repeat region
LRR_8	PF13855	222 - 282	2.1e-07	Leucine rich repeat
LRR_14	PF23598	240 - 293	1.4e-07	Leucine-rich repeat region
LRR_8	PF13855	293 - 348	9.6e-06	Leucine rich repeat
LRR_14	PF23598	306 - 411	2.3e-15	Leucine-rich repeat region
LRR_8	PF13855	312 - 372	2.7e-09	Leucine rich repeat
LRR_8	PF13855	336 - 395	3.6e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	381, 597, 669, 741
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	2 cut(s)	526, 1156
AcsI	RAATTY	2 cut(s)	143, 1081
AcyI	GRCGYC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	59, 143, 148, 164, 1192
AjiI	CACGTC	1 cut(s)	1134
AjnI	CCWGG	1 cut(s)	1164
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	5 cut(s)	399, 471, 687, 759, 831
AlwI	GGATC	2 cut(s)	526, 1156
AlwNI	CAGNNNCTG	5 cut(s)	407, 695, 767, 1021, 1165
AoxI	GGCC	4 cut(s)	132, 154, 232, 1095
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	143, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AsuHPI	GGTGA	1 cut(s)	944
AsuNHI	GCTAGC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	5 cut(s)	399, 471, 687, 759, 831
BbvI	GCAGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	1166
BfaI	CTAG	3 cut(s)	6, 81, 1240
BfmI	CTRYAG	3 cut(s)	217, 867, 993
BfuAI	ACCTGC	4 cut(s)	381, 597, 669, 741
BglII	AGATCT	1 cut(s)	1072
BisI	GCNGC	2 cut(s)	108, 196
BlsI	GCNGC	2 cut(s)	109, 197
Bme1390I	CCNGG	1 cut(s)	1166
BmgBI	CACGTC	1 cut(s)	1134
BmiI	GGNNCC	2 cut(s)	979, 1198
BmrFI	CCNGG	1 cut(s)	1166
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	1102
BpuEI	CTTGAG	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	5 cut(s)	390, 462, 678, 750, 935
BsaWI	WCCGGW	3 cut(s)	344, 560, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	1100, 1130
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	206, 278, 1119
Bse3DI	GCAATG	1 cut(s)	844
BseBI	CCWGG	1 cut(s)	1166
BseDI	CCNNGG	5 cut(s)	390, 462, 678, 750, 935
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	844
BseMII	CTCAG	6 cut(s)	342, 414, 558, 702, 774, 846
BseNI	ACTGG	3 cut(s)	206, 278, 1119
BseRI	GAGGAG	2 cut(s)	134, 137
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	4 cut(s)	134, 156, 234, 1097
BsiHKAI	GWGCWC	5 cut(s)	399, 471, 687, 759, 831
BsiSI	CCGG	4 cut(s)	345, 428, 561, 975
BslFI	GGGAC	1 cut(s)	963
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	963
BsnI	GGCC	4 cut(s)	134, 156, 234, 1097
Bsp1286I	GDGCHC	5 cut(s)	399, 471, 687, 759, 831
Bsp143I	GATC	3 cut(s)	531, 1072, 1161
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	4 cut(s)	134, 156, 234, 1097
BspCNI	CTCAG	6 cut(s)	341, 413, 557, 701, 773, 845
BspLI	GGNNCC	2 cut(s)	979, 1198
BspMAI	CTGCAG	1 cut(s)	221
BspMI	ACCTGC	4 cut(s)	381, 597, 669, 741
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	526, 1156
BsrDI	GCAATG	1 cut(s)	844
BsrI	ACTGG	3 cut(s)	206, 278, 1119
BssECI	CCNNGG	5 cut(s)	390, 462, 678, 750, 935
BssMI	GATC	3 cut(s)	531, 1072, 1161
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	4 cut(s)	390, 462, 678, 750
Bst2UI	CCWGG	1 cut(s)	1166
Bst4CI	ACNGT	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstC8I	GCNNGC	6 cut(s)	7, 112, 217, 1017, 1091, 1095
BstDEI	CTNAG	7 cut(s)	328, 400, 544, 688, 760, 832, 1223
BstDSI	CCRYGG	1 cut(s)	935
BstENI	CCTNNNNNAGG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	534, 1075, 1164
BstMBI	GATC	3 cut(s)	531, 1072, 1161
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 382, 598, 670, 742
BstNI	CCWGG	1 cut(s)	1166
BstNSI	RCATGY	2 cut(s)	554, 1093
BstSCI	CCNGG	1 cut(s)	1164
BstSFI	CTRYAG	3 cut(s)	217, 867, 993
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	3 cut(s)	531, 1072, 1161
BstYI	RGATCY	3 cut(s)	531, 1072, 1161
BsuRI	GGCC	4 cut(s)	134, 156, 234, 1097
BtgI	CCRYGG	1 cut(s)	935
BtrI	CACGTC	1 cut(s)	1134
BtsI	GCAGTG	2 cut(s)	350, 566
BtsIMutI	CAGTG	3 cut(s)	109, 350, 566
BveI	ACCTGC	4 cut(s)	381, 597, 669, 741
Cac8I	GCNNGC	6 cut(s)	7, 112, 217, 1017, 1091, 1095
CaiI	CAGNNNCTG	5 cut(s)	407, 695, 767, 1021, 1165
CseI	GACGC	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	4 cut(s)	236, 551, 1090, 1152
DdeI	CTNAG	7 cut(s)	328, 400, 544, 688, 760, 832, 1223
DpnI	GATC	3 cut(s)	533, 1074, 1163
DpnII	GATC	3 cut(s)	531, 1072, 1161
Eco130I	CCWWGG	4 cut(s)	390, 462, 678, 750
EcoNI	CCTNNNNNAGG	1 cut(s)	162
EcoO109I	RGGNCCY	2 cut(s)	133, 155
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	1164
EcoT14I	CCWWGG	4 cut(s)	390, 462, 678, 750
ErhI	CCWWGG	4 cut(s)	390, 462, 678, 750
FaeI	CATG	4 cut(s)	239, 554, 1093, 1155
FaqI	GGGAC	1 cut(s)	963
FatI	CATG	4 cut(s)	235, 550, 1089, 1151
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	108, 196
Fsp4HI	GCNGC	2 cut(s)	108, 196
FspBI	CTAG	3 cut(s)	6, 81, 1240
GluI	GCNGC	2 cut(s)	108, 196
GsuI	CTGGAG	1 cut(s)	1102
HaeIII	GGCC	4 cut(s)	134, 156, 234, 1097
HapII	CCGG	4 cut(s)	345, 428, 561, 975
HgaI	GACGC	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	4 cut(s)	239, 554, 1093, 1155
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HinfI	GANTC	1 cut(s)	483
HpaII	CCGG	4 cut(s)	345, 428, 561, 975
HphI	GGTGA	1 cut(s)	944
Hpy166II	GTNNAC	9 cut(s)	250, 350, 422, 494, 566, 854, 1052, 1124, 1157
Hpy188III	TCNNGA	6 cut(s)	330, 474, 546, 618, 1022, 1205
Hpy8I	GTNNAC	9 cut(s)	250, 350, 422, 494, 566, 854, 1052, 1124, 1157
HpyAV	CCTTC	6 cut(s)	65, 124, 183, 349, 565, 992
HpyCH4III	ACNGT	1 cut(s)	939
HpyCH4IV	ACGT	3 cut(s)	359, 575, 1133
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 382, 598, 670, 742
HpyF3I	CTNAG	7 cut(s)	328, 400, 544, 688, 760, 832, 1223
HpySE526I	ACGT	3 cut(s)	359, 575, 1133
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	4 cut(s)	239, 554, 1093, 1155
Kzo9I	GATC	3 cut(s)	531, 1072, 1161
Lsp1109I	GCAGC	1 cut(s)	182
MaeI	CTAG	3 cut(s)	6, 81, 1240
MaeII	ACGT	3 cut(s)	359, 575, 1133
MaeIII	GTNAC	6 cut(s)	221, 303, 447, 519, 807, 1005
MalI	GATC	3 cut(s)	533, 1074, 1163
MboI	GATC	3 cut(s)	531, 1072, 1161
MboII	GAAGA	5 cut(s)	20, 23, 26, 29, 200
MfeI	CAATTG	2 cut(s)	291, 507
MflI	RGATCY	3 cut(s)	531, 1072, 1161
MhlI	GDGCHC	5 cut(s)	399, 471, 687, 759, 831
MseI	TTAA	2 cut(s)	320, 1112
MspI	CCGG	4 cut(s)	345, 428, 561, 975
MspR9I	CCNGG	1 cut(s)	1166
MunI	CAATTG	2 cut(s)	291, 507
MvaI	CCWGG	1 cut(s)	1166
MwoI	GCNNNNNNNGC	5 cut(s)	216, 382, 598, 670, 742
NdeII	GATC	3 cut(s)	531, 1072, 1161
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	239, 554, 1093, 1155
NlaIV	GGNNCC	2 cut(s)	979, 1198
NmuCI	GTSAC	5 cut(s)	303, 447, 519, 807, 1005
NspI	RCATGY	2 cut(s)	554, 1093
PaeI	GCATGC	1 cut(s)	1093
PfeI	GAWTC	1 cut(s)	483
PfoI	TCCNGGA	1 cut(s)	1164
PkrI	GCNGC	2 cut(s)	109, 197
Psp6I	CCWGG	1 cut(s)	1164
PspGI	CCWGG	1 cut(s)	1164
PspN4I	GGNNCC	2 cut(s)	979, 1198
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	5 cut(s)	407, 695, 767, 1021, 1165
PsuI	RGATCY	3 cut(s)	531, 1072, 1161
SaqAI	TTAA	2 cut(s)	320, 1112
SatI	GCNGC	2 cut(s)	108, 196
Sau3AI	GATC	3 cut(s)	531, 1072, 1161
ScrFI	CCNGG	1 cut(s)	1166
SduI	GDGCHC	5 cut(s)	399, 471, 687, 759, 831
SfcI	CTRYAG	3 cut(s)	217, 867, 993
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SphI	GCATGC	1 cut(s)	1093
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	3 cut(s)	6, 81, 1240
StyD4I	CCNGG	1 cut(s)	1164
StyI	CCWWGG	4 cut(s)	390, 462, 678, 750
TaaI	ACNGT	1 cut(s)	939
TaiI	ACGT	3 cut(s)	362, 578, 1136
TaqI	TCGA	1 cut(s)	481
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	320, 1112
Tru9I	TTAA	2 cut(s)	320, 1112
TscAI	CASTG	3 cut(s)	109, 357, 573
TseFI	GTSAC	5 cut(s)	303, 447, 519, 807, 1005
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	5 cut(s)	303, 447, 519, 807, 1005
TspDTI	ATGAA	3 cut(s)	10, 14, 35
TspRI	CASTG	3 cut(s)	109, 357, 573
XagI	CCTNNNNNAGG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	143, 1081
XceI	RCATGY	2 cut(s)	554, 1093
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	3 cut(s)	6, 81, 1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.