Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

46538431 .. 46539237

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGACAACAGGACATGGCTTGCCTGGGAACTGGCTCATGAACTTGACGGTCTACAAGCATCATTTTGATCCTATGCATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGATGATATCATAGGACTCATTACAAAGTTTGACCTGTCAAGTAATAATCTATCGGGAGAAATACCAGATGAGTTACTGGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

67

Amino Acids

7.65

Weight (kDa)

4.48

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	22
AlwI	GGATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	35, 198
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	35, 198
Bsp143I	GATC	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	36
BspPI	GGATC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	35, 198
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	36
CviAII	CATG	2 cut(s)	14, 37
CviJI	RGCY	2 cut(s)	18, 34
CviKI_1	RGCY	2 cut(s)	18, 34
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	78
FaeI	CATG	2 cut(s)	17, 40
FaiI	YATR	7 cut(s)	15, 38, 74, 78, 108, 114, 128
FatI	CATG	2 cut(s)	13, 36
FblI	GTMKAC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	17, 40
HinfI	GANTC	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	37, 171
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	17, 40
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	9, 16, 36, 164, 179, 195
LweI	GCATC	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	78
MseI	TTAA	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	17, 40
NsiI	ATGCAT	1 cut(s)	78
PagI	TCATGA	1 cut(s)	36
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	53, 123
XmiI	GTMKAC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.