Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

20087278 .. 20087807

Gene Structure 530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTATTGGAGAAAACTTATAGCTGTTGTCCTATTACGTCTGGGAGCCAATAAGTTTACTGGAAATATTCCTCAACAAATATGTGGTCTCTCCGCTCTTCAGATCTTGGAGGAGAGAGTTGACGTTCTCATAGGTTTTCTTGATCTCATGTATATGGACATAAATGTCAAAGGAGTAGAGTATGAATATACAGATGCTCCCTTACTATTCATGAACAAGTTAGACTTGTCAAGTAACAATCTGTCGGGAGAAATACCAGAAGATATAAAAAGTCTCACGGCCTTGGAGAGCTTGAATTTATCTCACAACCACTTGACAGGAAAGATACCATGCGGTATTGGAAGCCTGCATAACTTAGAAGCTCTTGAGCTCTCTACTAATCATATTTGGGGTCCAATTCCTTCAAACATGACTCTTTTACTTCACTACATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

146

Amino Acids

16.24

Weight (kDa)

5.21

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	72 - 129	2e-08	Leucine rich repeat
LRR_4	PF12799	93 - 129	7.5e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	95
AciI	CCGC	2 cut(s)	93, 333
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	295, 405
AluBI	AGCT	4 cut(s)	23, 291, 362, 370
AluI	AGCT	4 cut(s)	23, 291, 362, 370
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	92, 278
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspS9I	GGNCC	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	372
BceAI	ACGGC	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	92, 278
BglII	AGATCT	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	46, 393
BmsI	GCATC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	92, 278
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	102, 142
BspACI	CCGC	2 cut(s)	93, 333
BspANI	GGCC	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	46, 393
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	102, 142
BssT1I	CCWWGG	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	105, 145
BstMAI	GTCTC	2 cut(s)	92, 278
BstMBI	GATC	2 cut(s)	102, 142
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	347
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	392
CviAII	CATG	5 cut(s)	148, 211, 330, 409, 430
CviJI	RGCY	7 cut(s)	23, 47, 281, 291, 345, 362, 370
CviKI_1	RGCY	7 cut(s)	23, 47, 281, 291, 345, 362, 370
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	2 cut(s)	104, 144
DpnII	GATC	2 cut(s)	102, 142
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	151, 214, 333, 412, 433
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	5 cut(s)	147, 210, 329, 408, 429
FriOI	GRGCYC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	281
Hin1II	CATG	5 cut(s)	151, 214, 333, 412, 433
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	57, 121
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	140, 211, 246, 365
Hpy8I	GTNNAC	2 cut(s)	57, 121
HpyAV	CCTTC	1 cut(s)	411
HpyCH4IV	ACGT	2 cut(s)	37, 123
HpyCH4V	TGCA	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	2 cut(s)	37, 123
Hsp92II	CATG	5 cut(s)	151, 214, 333, 412, 433
Kzo9I	GATC	2 cut(s)	102, 142
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	44, 202
LpnPI	CCDG	5 cut(s)	26, 45, 270, 303, 359
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	2 cut(s)	37, 123
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	104, 144
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	2 cut(s)	102, 142
MboII	GAAGA	2 cut(s)	89, 272
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	3 cut(s)	295, 396, 433
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	2 cut(s)	81, 103
MslI	CAYNNNNRTG	1 cut(s)	152
NdeII	GATC	2 cut(s)	102, 142
NlaIII	CATG	5 cut(s)	151, 214, 333, 412, 433
NlaIV	GGNNCC	2 cut(s)	46, 393
PagI	TCATGA	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	46, 393
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	102, 142
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	7 cut(s)	25, 40, 126, 136, 293, 364, 372
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	295, 396, 433
SsiI	CCGC	2 cut(s)	93, 333
SspI	AATATT	1 cut(s)	67
SstI	GAGCTC	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	2 cut(s)	40, 126
TasI	AATT	3 cut(s)	295, 396, 433
TspDTI	ATGAA	3 cut(s)	198, 199, 227
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.