MD01G1172200.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000285
Physical Location & Seq
Reverse (-)
27440430 .. 27440912
483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1172200.v1.1.491

Sequence Viewer

Length: 483 bp
ATGAACTGTCAGCTGAAAAGTCTCCACGTATTGGACCTTGCACATAACAACCTTTCCGGAATAATACCAAGATATTTCAGTGCCATGACCACCACGCCAGATGTTTACAAGGTATTGTTGATGTACGACACTTATCTGGATAATGTAAAGTTGGTGACAAAGGGGAGAGAAGCAGAATATGGTTGGATAATGCTTAGATTGGTAGTAATCATGGACCTTTCAGAGAACATGATATCAGGAGAGATCCCTGAGGAACTGACCAGCCTCCGCGGTTTGCAATCATTGAATCTATCCAAAAATCTTTTGACCAGAAGAATCCCTTCAGAACTTGTTAACATGAAATGGTTAGAGTCTGTGGATTTATCAATGAACCAACTTGATGGTTGGATTCCCCAAAGCACGAGGAGTTTGACATTTCTGATTAACTTAAACTTGTCCTACAACAATTTGACGGGAGAGATTCCAAAAAGCACTCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

161

Amino Acids

18.28

Weight (kDa)

5.66

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 2 cut(s) 268, 270
AclWI GGATC 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 2 cut(s) 13, 478
AluI AGCT 2 cut(s) 13, 478
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 238
Aor13HI TCCGGA 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 34, 214
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 34, 214
AxyI CCTNAGG 1 cut(s) 249
BauI CACGAG 1 cut(s) 400
BccI CCATC 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 34, 214
BmgT120I GGNCC 2 cut(s) 34, 214
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 268, 270
BspCNI CTCAG 1 cut(s) 241
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 1 cut(s) 270
BspPI GGATC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 194, 249, 474
BstDSI CCRYGG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 243
BstUI CGCG 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 34, 214
Cfr42I CCGCGG 1 cut(s) 271
Csp6I GTAC 1 cut(s) 124
CviAII CATG 4 cut(s) 85, 211, 229, 337
CviJI RGCY 3 cut(s) 13, 264, 478
CviKI_1 RGCY 3 cut(s) 13, 264, 478
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 194, 249, 474
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 34, 214
Eco57I CTGAAG 1 cut(s) 306
Eco81I CCTNAGG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 234
FaeI CATG 4 cut(s) 88, 214, 232, 340
FaiI YATR 6 cut(s) 45, 86, 180, 212, 230, 338
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FatI CATG 4 cut(s) 84, 210, 228, 336
HapII CCGG 1 cut(s) 57
Hin1II CATG 4 cut(s) 88, 214, 232, 340
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 5 cut(s) 286, 315, 350, 388, 460
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 106, 334
Hpy188I TCNGA 3 cut(s) 223, 325, 420
Hpy188III TCNNGA 3 cut(s) 57, 137, 237
Hpy8I GTNNAC 2 cut(s) 106, 334
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 41, 277
HpyF3I CTNAG 3 cut(s) 194, 249, 474
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 88, 214, 232, 340
Kpn2I TCCGGA 1 cut(s) 56
KspAI GTTAAC 1 cut(s) 334
KspI CCGCGG 1 cut(s) 271
Kzo9I GATC 1 cut(s) 243
LpnPI CCDG 7 cut(s) 70, 111, 122, 222, 261, 274, 322
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 324
MflI RGATCY 1 cut(s) 243
MluCI AATT 1 cut(s) 445
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 164, 365
MnlI CCTC 3 cut(s) 244, 275, 396
MroI TCCGGA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 3 cut(s) 333, 423, 428
MspA1I CMGCKG 2 cut(s) 13, 270
MspI CCGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 270
NdeII GATC 1 cut(s) 243
NlaIII CATG 4 cut(s) 88, 214, 232, 340
NmuCI GTSAC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 4 cut(s) 286, 315, 388, 460
PflMI CCANNNNNTGG 1 cut(s) 31
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 28
PspPI GGNCC 2 cut(s) 34, 214
PsuI RGATCY 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 271
SaqAI TTAA 3 cut(s) 333, 423, 428
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 34, 214
SchI GAGTC 1 cut(s) 359
SetI ASST 7 cut(s) 15, 30, 39, 54, 114, 219, 480
Sfr303I CCGCGG 1 cut(s) 271
SgrBI CCGCGG 1 cut(s) 271
SinI GGWCC 2 cut(s) 34, 214
Sse9I AATT 1 cut(s) 445
SsiI CCGC 2 cut(s) 268, 270
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 30
TasI AATT 1 cut(s) 445
TfiI GAWTC 4 cut(s) 286, 315, 388, 460
Tru1I TTAA 3 cut(s) 333, 423, 428
Tru9I TTAA 3 cut(s) 333, 423, 428
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 17, 353, 383
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 34, 214
XmnI GAANNNNTTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.