RchiOBHm_Chr1g0354151

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000285
Physical Location & Seq
Reverse (-)
47255762 .. 47256244
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57973

Sequence Viewer

Length: 483 bp
ATGTCAGAGTTGGAGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAATTATTCCTAGGGATTGGACGGATTTGCAATATTTGAAGGTCATAGACTTTTCAAATAACAATCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCCAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTGACAGGAAACAACTTTTCCGGCACCATACCAGATTGTATTGGAGAAAACCTTCATACATTGTCTTATTTAATTCTAAAAGCCAACAAGTTCACAGGAAATATTCCTCATCAATTATGTGATCTCTCCTCTCTTCAGGTTTTAGACCTTTCCCAAAATAATATATCTGGCTCCATTCCTGCATGTCTTGGTGGTTTGAAACAAATGCAACAGGAGATGGCTTGCGTAGCGACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

160

Amino Acids

17.56

Weight (kDa)

4.64

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 63 2.1e-10 Leucine rich repeat
LRR_8 PF13855 42 - 87 4.8e-06 Leucine rich repeat
LRR_14 PF23598 69 - 150 1.3e-07 Leucine-rich repeat region
LRR_8 PF13855 75 - 136 3.2e-08 Leucine rich repeat
LRR_8 PF13855 101 - 151 5.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 362
AgsI TTSAA 3 cut(s) 85, 102, 442
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw21I GWGCWC 1 cut(s) 143
Asp700I GAANNNNTTC 2 cut(s) 38, 294
AspA2I CCTAGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 131
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 2 cut(s) 160, 454
BfaI CTAG 1 cut(s) 57
BlnI CCTAGG 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 268, 415
BpuEI CTTGAG 2 cut(s) 13, 221
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse1I ACTGG 1 cut(s) 481
BseDI CCNNGG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 3 cut(s) 22, 241, 364
BspLI GGNNCC 2 cut(s) 268, 415
BspT107I GGYRCC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 3 cut(s) 22, 241, 364
BssT1I CCWWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 25, 244, 367
BstMBI GATC 3 cut(s) 22, 241, 364
BstMWI GCNNNNNNNGC 2 cut(s) 138, 470
BstNSI RCATGY 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 466
CviAII CATG 2 cut(s) 136, 426
CviJI RGCY 4 cut(s) 132, 326, 414, 464
CviKI_1 RGCY 4 cut(s) 132, 326, 414, 464
DpnI GATC 3 cut(s) 24, 243, 366
DpnII GATC 3 cut(s) 22, 241, 364
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 139, 429
FaiI YATR 7 cut(s) 92, 137, 272, 300, 361, 407, 427
FatI CATG 2 cut(s) 135, 425
FspBI CTAG 1 cut(s) 57
HapII CCGG 1 cut(s) 264
Hin1II CATG 2 cut(s) 139, 429
HinfI GANTC 2 cut(s) 196, 203
HpaII CCGG 1 cut(s) 264
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 7, 246
Hpy188III TCNNGA 3 cut(s) 20, 45, 200
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 2 cut(s) 79, 305
HpyCH4V TGCA 6 cut(s) 76, 214, 222, 236, 425, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 470
Hsp92II CATG 2 cut(s) 139, 429
Kzo9I GATC 3 cut(s) 22, 241, 364
LmnI GCTCC 3 cut(s) 137, 146, 419
MaeI CTAG 1 cut(s) 57
MalI GATC 3 cut(s) 24, 243, 366
MboI GATC 3 cut(s) 22, 241, 364
MboII GAAGA 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 4 cut(s) 34, 48, 315, 356
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 360, 382
MroXI GAANNNNTTC 2 cut(s) 38, 294
MseI TTAA 2 cut(s) 173, 314
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 138, 470
NdeII GATC 3 cut(s) 22, 241, 364
NlaIII CATG 2 cut(s) 139, 429
NlaIV GGNNCC 2 cut(s) 268, 415
NspI RCATGY 1 cut(s) 429
PdmI GAANNNNTTC 2 cut(s) 38, 294
PfeI GAWTC 1 cut(s) 196
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 268, 415
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 2 cut(s) 173, 314
Sau3AI GATC 3 cut(s) 22, 241, 364
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 143
SetI ASST 5 cut(s) 90, 134, 297, 384, 393
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 28, 200
SmoI CTYRAG 2 cut(s) 28, 200
Sse9I AATT 4 cut(s) 34, 48, 315, 356
SspI AATATT 2 cut(s) 80, 346
SspMI CTAG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 56
TasI AATT 4 cut(s) 34, 48, 315, 356
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 173, 314
Tru9I TTAA 2 cut(s) 173, 314
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 83
XceI RCATGY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 56
XmnI GAANNNNTTC 2 cut(s) 38, 294
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.