RchiOBHm_Chr4g0441421

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
63255019 .. 63255405
387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40927

Sequence Viewer

Length: 387 bp
ATGTGGGCATGCCCAGGTGGTGAGTTAGATCCTTCTCTGCTTAATTTAACATACTTGAATTACTTGGACCTTAGTTACAACAATTTCAGGGGAACTACCATTCCAAGTTTCATAGGTTCACCCAAGAAGTTAAGGCACCTTGACCTCTTTGTTTCATTCTTTGGGGGAACGGTCCCTCTTCATCTTGGGAATCTATCAAACTTGAATTACTTGGACCTCAGTGACAACAATTTCAATGGAACTCCTGTCCCAAGTTTCATAGGCTCACTCAAGAAATTGAGCTACCTTGACCTTTCCCTCTCATATTTTTCGGGAATGGTTCCTCCTCAACTTGGAAATCTGTCACACTTGCTCCATCTTGATCTCATAACATGTTCTATCCCATGA

Protein Analysis

128

Amino Acids

14.12

Weight (kDa)

5.99

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 9 - 125 1.2e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 135
AclWI GGATC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 332
AflIII ACRYGT 1 cut(s) 371
AgsI TTSAA 3 cut(s) 58, 205, 235
AjnI CCWGG 1 cut(s) 13
AloI GAACNNNNNNTCC 2 cut(s) 85, 117
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
AlwI GGATC 1 cut(s) 23
AspS9I GGNCC 3 cut(s) 67, 172, 214
AsuHPI GGTGA 2 cut(s) 32, 111
AvaII GGWCC 3 cut(s) 67, 172, 214
BanI GGYRCC 1 cut(s) 135
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 3 cut(s) 67, 172, 214
BmgT120I GGNCC 3 cut(s) 67, 172, 214
BmiI GGNNCC 3 cut(s) 137, 174, 321
BmrFI CCNGG 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 135
BslFI GGGAC 2 cut(s) 158, 233
BslI CCNNNNNNNGG 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 158, 233
Bsp143I GATC 2 cut(s) 28, 361
BspCNI CTCAG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 137, 174, 321
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 28, 361
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 71, 218
BstKTI GATC 2 cut(s) 31, 364
BstMBI GATC 2 cut(s) 28, 361
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 2 cut(s) 12, 375
BstSCI CCNGG 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 67, 172, 214
CviAII CATG 3 cut(s) 9, 372, 384
CviJI RGCY 2 cut(s) 264, 282
CviKI_1 RGCY 2 cut(s) 264, 282
DdeI CTNAG 2 cut(s) 71, 218
DpnI GATC 2 cut(s) 30, 363
DpnII GATC 2 cut(s) 28, 361
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 3 cut(s) 67, 172, 214
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 12, 375, 387
FaiI YATR 8 cut(s) 10, 52, 113, 260, 304, 368, 373, 385
FaqI GGGAC 2 cut(s) 158, 233
FatI CATG 3 cut(s) 8, 371, 383
Hin1II CATG 3 cut(s) 12, 375, 387
HinfI GANTC 1 cut(s) 190
HphI GGTGA 2 cut(s) 32, 111
Hpy166II GTNNAC 1 cut(s) 119
Hpy188III TCNNGA 3 cut(s) 271, 312, 359
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 71, 218
Hsp92II CATG 3 cut(s) 12, 375, 387
Kzo9I GATC 2 cut(s) 28, 361
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 3 cut(s) 27, 73, 258
MaeIII GTNAC 3 cut(s) 74, 221, 342
MalI GATC 2 cut(s) 30, 363
MboI GATC 2 cut(s) 28, 361
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 28
MluCI AATT 6 cut(s) 43, 58, 82, 205, 229, 275
MnlI CCTC 6 cut(s) 155, 186, 227, 308, 333, 336
MseI TTAA 3 cut(s) 42, 47, 131
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
NdeII GATC 2 cut(s) 28, 361
NlaIII CATG 3 cut(s) 12, 375, 387
NlaIV GGNNCC 3 cut(s) 137, 174, 321
NmuCI GTSAC 2 cut(s) 221, 342
NspI RCATGY 2 cut(s) 12, 375
PaeI GCATGC 1 cut(s) 12
PciI ACATGT 1 cut(s) 371
PfeI GAWTC 1 cut(s) 190
PscI ACATGT 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 137, 174, 321
PspPI GGNCC 3 cut(s) 67, 172, 214
PsuI RGATCY 1 cut(s) 28
SaqAI TTAA 3 cut(s) 42, 47, 131
Sau3AI GATC 2 cut(s) 28, 361
Sau96I GGNCC 3 cut(s) 67, 172, 214
ScrFI CCNGG 1 cut(s) 15
SetI ASST 9 cut(s) 19, 72, 118, 141, 147, 219, 284, 288, 294
SinI GGWCC 3 cut(s) 67, 172, 214
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 12
Sse9I AATT 6 cut(s) 43, 58, 82, 205, 229, 275
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 172
TasI AATT 6 cut(s) 43, 58, 82, 205, 229, 275
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 3 cut(s) 42, 47, 131
Tru9I TTAA 3 cut(s) 42, 47, 131
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 221, 342
Tsp45I GTSAC 2 cut(s) 221, 342
TspDTI ATGAA 4 cut(s) 100, 144, 170, 247
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 3 cut(s) 67, 172, 214
XceI RCATGY 2 cut(s) 12, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.