Rroxscaffold_4G00301100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000285
Physical Location & Seq
Forward (+)
21469552 .. 21473366
3815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301100.1

Sequence Viewer

Length: 438 bp
ATGAAAGGAATAAGCAGCCTCGAAAATGATGTAAAAACCTTGTACCTTTCCTACAACAAGATCTCCGGTCCACTTCCAGGGTGGATTGGAAATCTGCCACATTTGGAGTCGTTGTGCCTTTCCAAAAACTTGATTTCTGGTCCACTTCCGCCATCAATTGGAAATCTTTCACATTTGCAGATCTTGGACCTTAGCTTTAACTCAATCGCCGGTCCACTTCAAACATCAATAGGAAACCTGTCGCATTTAGAGGACCTCGAGCTATCCTTTAACTCAGAACGGAATGGAACTATTCTAGAAAGTATTGGACAACTCAGAGAATTACAGTACTTGGATCTCAGGGCTTGGCCAGCAACAGATCGATTTTCCGGACCAATTCCCTTAAACGTTGGGAGTGAGTTGTCAAAAGTTGAGTGCCCCAGGTCTTTCGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

5.0

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 11 - 69 9.9e-10 Leucine rich repeat
LRR_14 PF23598 15 - 115 4.7e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 1 cut(s) 149
AclI AACGTT 1 cut(s) 387
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 347
AfaI GTAC 2 cut(s) 44, 329
AfiI CCNNNNNNNGG 2 cut(s) 77, 158
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 2 cut(s) 76, 419
AluBI AGCT 2 cut(s) 195, 262
AluI AGCT 2 cut(s) 195, 262
AlwI GGATC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 166
AspS9I GGNCC 6 cut(s) 68, 140, 187, 212, 253, 371
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 6 cut(s) 68, 140, 187, 212, 253, 371
BaeGI GKGCMC 1 cut(s) 419
BalI TGGCCA 1 cut(s) 349
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 78, 421
BfaI CTAG 1 cut(s) 296
BglII AGATCT 2 cut(s) 60, 180
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 78, 421
Bme18I GGWCC 6 cut(s) 68, 140, 187, 212, 253, 371
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 6 cut(s) 68, 140, 187, 212, 253, 371
BmrFI CCNGG 2 cut(s) 78, 421
Bpu10I CCTNAGC 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 77, 419
BsaWI WCCGGW 2 cut(s) 65, 368
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 158
Bse118I RCCGGY 1 cut(s) 209
BseAI TCCGGA 1 cut(s) 368
BseBI CCWGG 2 cut(s) 78, 421
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 77, 419
BseLI CCNNNNNNNGG 2 cut(s) 77, 158
BseMII CTCAG 3 cut(s) 288, 328, 352
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 66, 210, 369
BslI CCNNNNNNNGG 2 cut(s) 77, 158
BsnI GGCC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 419
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 4 cut(s) 60, 180, 334, 358
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 3 cut(s) 287, 327, 351
BspDI ATCGAT 1 cut(s) 361
BspEI TCCGGA 1 cut(s) 368
BspPI GGATC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 77, 419
BssMI GATC 4 cut(s) 60, 180, 334, 358
Bst2UI CCWGG 2 cut(s) 78, 421
Bst4CI ACNGT 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 191, 274, 314, 338
BstKTI GATC 4 cut(s) 63, 183, 337, 361
BstMBI GATC 4 cut(s) 60, 180, 334, 358
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 2 cut(s) 78, 421
BstSCI CCNGG 2 cut(s) 76, 419
BstSLI GKGCMC 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 3 cut(s) 60, 180, 334
BstYI RGATCY 3 cut(s) 60, 180, 334
Bsu15I ATCGAT 1 cut(s) 361
BsuRI GGCC 1 cut(s) 349
BsuTUI ATCGAT 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 6 cut(s) 68, 140, 187, 212, 253, 371
ClaI ATCGAT 1 cut(s) 361
Csp6I GTAC 2 cut(s) 43, 328
CviJI RGCY 5 cut(s) 18, 195, 262, 344, 349
CviKI_1 RGCY 5 cut(s) 18, 195, 262, 344, 349
CviQI GTAC 2 cut(s) 43, 328
DdeI CTNAG 4 cut(s) 191, 274, 314, 338
DpnI GATC 4 cut(s) 62, 182, 336, 360
DpnII GATC 4 cut(s) 60, 180, 334, 358
EaeI YGGCCR 1 cut(s) 347
EciI GGCGGA 1 cut(s) 138
Eco47I GGWCC 6 cut(s) 68, 140, 187, 212, 253, 371
Eco88I CYCGRG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 76, 419
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 349
HapII CCGG 3 cut(s) 66, 210, 369
HinfI GANTC 1 cut(s) 107
HpaII CCGG 3 cut(s) 66, 210, 369
Hpy166II GTNNAC 3 cut(s) 71, 143, 215
Hpy188I TCNGA 2 cut(s) 277, 317
Hpy188III TCNNGA 2 cut(s) 296, 369
Hpy8I GTNNAC 3 cut(s) 71, 143, 215
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 4 cut(s) 191, 274, 314, 338
HpySE526I ACGT 1 cut(s) 387
Kpn2I TCCGGA 1 cut(s) 368
Kzo9I GATC 4 cut(s) 60, 180, 334, 358
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 387
MalI GATC 4 cut(s) 62, 182, 336, 360
MboI GATC 4 cut(s) 60, 180, 334, 358
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 3 cut(s) 60, 180, 334
MhlI GDGCHC 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 3 cut(s) 156, 320, 375
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 4 cut(s) 29, 244, 266, 424
Mox20I TGGCCA 1 cut(s) 349
MroI TCCGGA 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 349
MseI TTAA 3 cut(s) 198, 270, 383
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 3 cut(s) 66, 210, 369
MspR9I CCNGG 2 cut(s) 78, 421
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 2 cut(s) 78, 421
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 4 cut(s) 60, 180, 334, 358
PaeR7I CTCGAG 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 253
Psp1406I AACGTT 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 76, 419
PspGI CCWGG 2 cut(s) 76, 419
PspPI GGNCC 6 cut(s) 68, 140, 187, 212, 253, 371
PspPPI RGGWCCY 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 257
PsuI RGATCY 3 cut(s) 60, 180, 334
RsaI GTAC 2 cut(s) 44, 329
RsaNI GTAC 2 cut(s) 43, 328
SaqAI TTAA 3 cut(s) 198, 270, 383
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 4 cut(s) 60, 180, 334, 358
Sau96I GGNCC 6 cut(s) 68, 140, 187, 212, 253, 371
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 78, 421
SduI GDGCHC 1 cut(s) 419
SetI ASST 9 cut(s) 41, 48, 192, 197, 240, 258, 264, 390, 425
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 6 cut(s) 68, 140, 187, 212, 253, 371
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 3 cut(s) 156, 320, 375
SsiI CCGC 1 cut(s) 149
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 76, 419
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 390
TaqI TCGA 4 cut(s) 21, 258, 361, 429
TasI AATT 3 cut(s) 156, 320, 375
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 3 cut(s) 198, 270, 383
Tru9I TTAA 3 cut(s) 198, 270, 383
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 6 cut(s) 68, 140, 187, 212, 253, 371
XbaI TCTAGA 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.