Rw1G022120

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000285
Physical Location & Seq
Forward (+)
46851160 .. 46852281
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022120.1

Sequence Viewer

Length: 1122 bp
ATGCCTGCGCTTCATTCTTGGGTTGGCAAAGACTGCTGCAACTGGCATGGCATAGTCTGCAACAACCAAACAGGTAACATCATCGAGCTTCGTCTTTTGGATACACAAATCTCTGGTACACTTTCAATGTCAATAGGCAGTCTTTCGGATTTGGAGACCTTGATTCTTTTCAACAATTCGTTCTCTGGCCCACTTCCGACATCGATCGGAAATCTTTCACATTTGAGGACCATGAACCTTTCTTGGAACTCAATTTCCGGTCCACTTCCAACATCGATCGGAAATCTTTCACGTTTGAGGACCATGAACCTTTCTTGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAATCTTTCAAATTTGCAGAACTTGGACCTTTATGGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTGGAATTTGCAGACCCTGCACCTTTCTTCAAACTCAATTTCTGGTCCACTTCCGACATCGATTGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGCACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGCCCTGGACCTTTACTGGAACTCAATTTCCGACCCACTTCCGACATCGATCGGAATTCTTTCGAATTTGCAGACCCTGGACCTTTCTTGGAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGCACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCAGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATCGGAAGTCTTTCGAATTTGCGGACCCTGGACCTTTCTTCAAACTCAATTTCCGGTCCACTTCCGACATCGATTGGAAGTCTTTCGAATTTGCAGTACTTGGACCTTTCCGACAACTCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001704 GO:0001706 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0008152 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010154 GO:0010232 GO:0010233 GO:0010305 GO:0010453 GO:0010470 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033993 GO:0035987 GO:0036211 GO:0038023 GO:0042044 GO:0042221 GO:0042592 GO:0042659 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048545 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

373

Amino Acids

42.3

Weight (kDa)

10.81

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 16 - 104 7.6e-08 Leucine-rich repeat region
LRR_8 PF13855 51 - 109 4.4e-06 Leucine rich repeat
LRR_14 PF23598 92 - 178 3.2e-14 Leucine-rich repeat region
LRR_14 PF23598 141 - 220 1.6e-12 Leucine-rich repeat region
LRR_8 PF13855 146 - 205 9.1e-10 Leucine rich repeat
LRR_4 PF12799 146 - 182 4.9e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 169 - 220 3.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1017
AfaI GTAC 2 cut(s) 118, 1093
AjnI CCWGG 6 cut(s) 519, 662, 734, 878, 950, 1022
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 7 cut(s) 448, 520, 592, 735, 807, 879, 951
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 36, 658
AspLEI GCGC 1 cut(s) 10
AsuII TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
BbvI GCAGC 2 cut(s) 23, 670
BciT130I CCWGG 6 cut(s) 521, 664, 736, 880, 952, 1024
BciVI GTATCC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 2 cut(s) 37, 659
BlsI GCNGC 2 cut(s) 38, 660
BmcAI AGTACT 1 cut(s) 1093
Bme1390I CCNGG 6 cut(s) 521, 664, 736, 880, 952, 1024
BmiI GGNNCC 1 cut(s) 1021
BmrFI CCNGG 6 cut(s) 521, 664, 736, 880, 952, 1024
Bpu14I TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 6 cut(s) 519, 662, 734, 878, 950, 1022
Bse1I ACTGG 2 cut(s) 47, 679
BseBI CCWGG 6 cut(s) 521, 664, 736, 880, 952, 1024
BseDI CCNNGG 6 cut(s) 519, 662, 734, 878, 950, 1022
BseNI ACTGG 2 cut(s) 47, 679
BseXI GCAGC 2 cut(s) 23, 670
BsgI GTGCAG 3 cut(s) 434, 578, 793
BshFI GGCC 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
BspACI CCGC 1 cut(s) 1017
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 1021
BspT104I TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 47, 679
BssECI CCNNGG 6 cut(s) 519, 662, 734, 878, 950, 1022
Bst2UI CCWGG 6 cut(s) 521, 664, 736, 880, 952, 1024
BstAPI GCANNNNNTGC 5 cut(s) 33, 57, 448, 592, 807
BstBI TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
BstC8I GCNNGC 1 cut(s) 6
BstHHI GCGC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 5 cut(s) 33, 57, 448, 592, 807
BstNI CCWGG 6 cut(s) 521, 664, 736, 880, 952, 1024
BstSCI CCNGG 6 cut(s) 519, 662, 734, 878, 950, 1022
BstV1I GCAGC 2 cut(s) 23, 670
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 7 cut(s) 448, 520, 592, 735, 807, 879, 951
CfoI GCGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 117, 1092
CviAII CATG 3 cut(s) 47, 232, 304
CviJI RGCY 3 cut(s) 88, 189, 661
CviKI_1 RGCY 3 cut(s) 88, 189, 661
CviQI GTAC 2 cut(s) 117, 1092
Eco31I GGTCTC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 713
EcoRII CCWGG 6 cut(s) 519, 662, 734, 878, 950, 1022
FaeI CATG 3 cut(s) 50, 235, 307
FaiI YATR 5 cut(s) 48, 53, 233, 305, 387
FatI CATG 3 cut(s) 46, 231, 303
Fnu4HI GCNGC 2 cut(s) 37, 659
Fsp4HI GCNGC 2 cut(s) 37, 659
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 37, 659
HaeIII GGCC 1 cut(s) 189
HhaI GCGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 50, 235, 307
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 57, 448, 592, 807
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 3 cut(s) 50, 235, 307
HspAI GCGC 1 cut(s) 8
Lsp1109I GCAGC 2 cut(s) 23, 670
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 7 cut(s) 450, 522, 594, 809, 881, 953, 1025
MnlI CCTC 2 cut(s) 219, 291
MspR9I CCNGG 6 cut(s) 521, 664, 736, 880, 952, 1024
MvaI CCWGG 6 cut(s) 521, 664, 736, 880, 952, 1024
MwoI GCNNNNNNNGC 5 cut(s) 33, 57, 448, 592, 807
NlaIII CATG 3 cut(s) 50, 235, 307
NlaIV GGNNCC 1 cut(s) 1021
NspV TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 38, 660
Psp6I CCWGG 6 cut(s) 519, 662, 734, 878, 950, 1022
PspGI CCWGG 6 cut(s) 519, 662, 734, 878, 950, 1022
PspN4I GGNNCC 1 cut(s) 1021
PstNI CAGNNNCTG 7 cut(s) 448, 520, 592, 735, 807, 879, 951
RsaI GTAC 2 cut(s) 118, 1093
RsaNI GTAC 2 cut(s) 117, 1092
SatI GCNGC 2 cut(s) 37, 659
ScaI AGTACT 1 cut(s) 1093
ScrFI CCNGG 6 cut(s) 521, 664, 736, 880, 952, 1024
SfuI TTCGAA 9 cut(s) 506, 578, 650, 721, 793, 865, 937, 1009, 1081
SsiI CCGC 1 cut(s) 1017
StyD4I CCNGG 6 cut(s) 519, 662, 734, 878, 950, 1022
TaiI ACGT 1 cut(s) 295
TatI WGTACW 1 cut(s) 1091
TfiI GAWTC 1 cut(s) 163
TseI GCWGC 2 cut(s) 36, 658
TspDTI ATGAA 2 cut(s) 248, 320
ZrmI AGTACT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.