RLG00000028214

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
20174344 .. 20175180
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028214

Sequence Viewer

Length: 558 bp
ATGACAACAGGAGATGCCTTGCTTGGAAACAGCTGGTTTAGGAACTTGACGATCTCTTTGGGTCTTTATGATCCCATACATATCGACTTAAATGTGAAAGGAGTAGAATATGAATATTTTGATGATATCATAGGACTCATTAGAAAGTTTGACCTGTCAAGTAATAATCTATCGGGAGAAATACCAGAAGAGGTGAAAAACCTCATGGCTTTGGATAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCAGAAGCTTACATAAGTTAGAAGCACTTGACCTCTCTAGTAACCATCTTTGGGGTTCAATTCCTTCAAGCATGACCTCTATGACTGCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCTGGGCTTTGTGGACCTCCATTGCCAACCCAATGCAGCTCAGTGTCCCATAATGATCCGGCTGCGAAGGTTGATGAAGATGAAGAAGATAAATTGGGTATATAG

Protein Analysis

186

Amino Acids

20.18

Weight (kDa)

4.62

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 48 - 105 6e-09 Leucine rich repeat
LRR_14 PF23598 54 - 124 3.4e-07 Leucine-rich repeat region
LRR_4 PF12799 71 - 109 6.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 65, 503
AcsI RAATTY 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 7 cut(s) 223, 324, 333, 367, 379, 427, 446
AluBI AGCT 4 cut(s) 33, 219, 273, 492
AluI AGCT 4 cut(s) 33, 219, 273, 492
AlwI GGATC 2 cut(s) 65, 503
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 2 cut(s) 489, 515
ApoI RAATTY 1 cut(s) 367
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
AspS9I GGNCC 2 cut(s) 392, 467
AsuHPI GGTGA 2 cut(s) 205, 412
AvaII GGWCC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 501, 502
BccI CCATC 2 cut(s) 318, 409
BfaI CTAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 490, 516
BlsI GCNGC 2 cut(s) 491, 517
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 392, 467
BmsI GCATC 1 cut(s) 4
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 473
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 1 cut(s) 507
BseXI GCAGC 2 cut(s) 501, 502
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 1 cut(s) 394
Bsp143I GATC 3 cut(s) 51, 70, 508
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 506
BspPI GGATC 2 cut(s) 65, 503
BsrDI GCAATG 1 cut(s) 473
BssMI GATC 3 cut(s) 51, 70, 508
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 356, 493
BstKTI GATC 3 cut(s) 54, 73, 511
BstMBI GATC 3 cut(s) 51, 70, 508
BstV1I GCAGC 2 cut(s) 501, 502
BsuRI GGCC 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 501
Cfr13I GGNCC 2 cut(s) 392, 467
CviAII CATG 2 cut(s) 205, 337
CviJI RGCY 9 cut(s) 33, 209, 219, 273, 394, 407, 460, 492, 515
CviKI_1 RGCY 9 cut(s) 33, 209, 219, 273, 394, 407, 460, 492, 515
DdeI CTNAG 2 cut(s) 356, 493
DpnI GATC 3 cut(s) 53, 72, 510
DpnII GATC 3 cut(s) 51, 70, 508
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 467
EcoRV GATATC 1 cut(s) 127
FaeI CATG 2 cut(s) 208, 340
FaqI GGGAC 1 cut(s) 484
FatI CATG 2 cut(s) 204, 336
Fnu4HI GCNGC 2 cut(s) 490, 516
Fsp4HI GCNGC 2 cut(s) 490, 516
FspBI CTAG 1 cut(s) 303
GluI GCNGC 2 cut(s) 490, 516
HaeIII GGCC 1 cut(s) 394
HapII CCGG 1 cut(s) 512
Hin1II CATG 2 cut(s) 208, 340
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 205, 412
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 4 cut(s) 339, 433, 440, 514
HpyCH4V TGCA 2 cut(s) 353, 489
HpyF3I CTNAG 2 cut(s) 356, 493
Hsp92II CATG 2 cut(s) 208, 340
Kzo9I GATC 3 cut(s) 51, 70, 508
LpnPI CCDG 8 cut(s) 19, 167, 198, 231, 270, 375, 441, 525
Lsp1109I GCAGC 2 cut(s) 501, 502
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 53, 72, 510
MboI GATC 3 cut(s) 51, 70, 508
MboII GAAGA 4 cut(s) 200, 542, 548, 551
MluCI AATT 5 cut(s) 324, 362, 367, 413, 545
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 8 cut(s) 184, 212, 253, 308, 352, 428, 448, 480
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 512
NdeII GATC 3 cut(s) 51, 70, 508
NlaIII CATG 2 cut(s) 208, 340
PkrI GCNGC 2 cut(s) 491, 517
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PspPI GGNCC 2 cut(s) 392, 467
PvuII CAGCTG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 2 cut(s) 490, 516
Sau3AI GATC 3 cut(s) 51, 70, 508
Sau96I GGNCC 2 cut(s) 392, 467
SchI GAGTC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 467
Sse9I AATT 5 cut(s) 324, 362, 367, 413, 545
SspI AATATT 1 cut(s) 116
SspMI CTAG 1 cut(s) 303
TaqI TCGA 1 cut(s) 84
TasI AATT 5 cut(s) 324, 362, 367, 413, 545
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 1 cut(s) 501
TseI GCWGC 2 cut(s) 489, 515
TspDTI ATGAA 3 cut(s) 126, 543, 549
TspRI CASTG 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 1 cut(s) 367
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.