Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Reverse (-)

46795163 .. 46796391

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCAAAGTTGGTGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAATTATTCCTAGGGATTGGACGGGTTTGCAAGATTTGATGGTCATAGACTTTTCAAATAACAATCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCCAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTGGCAGGAAACAACTTTTCCGGCACCATACCAGATTGTATTGGAGAAAACCTTCATAAATTGTCTTATTTACTTCTAGGAGCCAACAAGTTCATAGGAAATATTCCTCATCAATTATGCGATCTCTCCTCTCTTCAGGTTTTAGACCTTTCCCAAAATAATATATCTGGCTCCATTCCTGCATGTCTTGGTGGTTTGAAACAAATGACAACAATAGATGGCTTGCTTGGGAACAGCTGGATTTGGCGCTTCACGATCTCTGTGGAGCTTTATGATCCTGTGCATATTGACTTAAATGTGAAAGGAGTAGAATATGAATATATTGATAATATCATAGGACTCATTAAAAAGTTGGACCTGTCAAGTAATAATCTATCGGGAGAAATACCAGAAGAGATGAAAAATCTCATGGCTTTGGGTAGCTTGAACTTATCCCATAACCATTTGACAGGAAAGATACCAGAGGGTATCGGAAGCTTACATGAGTTAGAAGCACTTGACCTCTCTAATAACCATCTTTGGGGTTTAATTCCTTCAAGCATGACCTCTATGACTTCACTAAGCAAATTGAATTTGTCATTCAACAACTTCTCTGGGCCAATCCCATCAGCCAACCAATTCCTCACCTTCAATGACCCAACCTCATTTGAAGGAAACTCAGGACTTTGCGGACCTCCATTGCCAACCCAATGCAGTTCAGTTAATGATCCAGCTGTGAAGGTTGACGAAGATGAAGAAGATAAGTATGGAAAATTATGGTTCTATGCAAGCACATCATTGGGGTTCATTGTAGGATTTTGGGTTGCTTTTGGAAGTTTGGTGATAAAGAGGTCATGGAGACATGCTTACTTCCAGTTTCTTGACAATATGAAAGACAAGCTTTGCTTCTGTTTTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

381

Amino Acids

42.19

Weight (kDa)

4.99

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	3 - 63	7.6e-10	Leucine rich repeat
LRR_14	PF23598	69 - 152	6.5e-07	Leucine-rich repeat region
LRR_8	PF13855	101 - 154	2e-06	Leucine rich repeat
LRR_14	PF23598	188 - 273	4.4e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	1 cut(s)	912
AclWI	GGATC	2 cut(s)	512, 944
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgsI	TTSAA	8 cut(s)	102, 442, 670, 780, 814, 826, 874, 893
AluBI	AGCT	7 cut(s)	132, 480, 511, 666, 720, 956, 1123
AluI	AGCT	7 cut(s)	132, 480, 511, 666, 720, 956, 1123
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	1075
AlwI	GGATC	2 cut(s)	512, 944
AoxI	GGCC	1 cut(s)	839
ApoI	RAATTY	1 cut(s)	814
Asp700I	GAANNNNTTC	2 cut(s)	38, 294
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	598, 839, 914
AsuHPI	GGTGA	3 cut(s)	131, 859, 1075
AvaII	GGWCC	2 cut(s)	598, 914
AvrII	CCTAGG	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	143
BccI	CCATC	5 cut(s)	79, 160, 455, 765, 856
BcoDI	GTCTC	1 cut(s)	1075
BfaI	CTAG	2 cut(s)	57, 320
BfoI	RGCGCY	1 cut(s)	493
BlnI	CCTAGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	598, 914
BmgT120I	GGNCC	3 cut(s)	598, 839, 914
BmiI	GGNNCC	3 cut(s)	268, 325, 415
BpuEI	CTTGAG	2 cut(s)	13, 221
BsaJI	CCNNGG	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse1I	ACTGG	1 cut(s)	1096
Bse3DI	GCAATG	1 cut(s)	920
BseDI	CCNNGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	1 cut(s)	1096
BseRI	GAGGAG	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	841
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	1075
BsnI	GGCC	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
BspACI	CCGC	1 cut(s)	912
BspANI	GGCC	1 cut(s)	841
BspCNI	CTCAG	1 cut(s)	914
BspLI	GGNNCC	3 cut(s)	268, 325, 415
BspPI	GGATC	2 cut(s)	512, 944
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	920
BsrI	ACTGG	1 cut(s)	1096
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
BssT1I	CCWWGG	1 cut(s)	56
Bst6I	CTCTTC	2 cut(s)	381, 630
BstC8I	GCNNGC	2 cut(s)	467, 1012
BstDEI	CTNAG	2 cut(s)	803, 901
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	6 cut(s)	25, 244, 367, 501, 520, 952
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	429, 1088
BsuRI	GGCC	1 cut(s)	841
Cac8I	GCNNGC	2 cut(s)	467, 1012
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	598, 839, 914
CviAII	CATG	7 cut(s)	136, 426, 652, 725, 784, 1077, 1085
DdeI	CTNAG	2 cut(s)	803, 901
DpnI	GATC	6 cut(s)	24, 243, 366, 500, 519, 951
DpnII	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
Eam1104I	CTCTTC	2 cut(s)	381, 630
EarI	CTCTTC	2 cut(s)	381, 630
Eco130I	CCWWGG	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	598, 914
Eco57I	CTGAAG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	7 cut(s)	139, 429, 655, 728, 787, 1080, 1088
FalI	AAGNNNNNCTT	4 cut(s)	1107, 1139, 1112, 1144
FatI	CATG	7 cut(s)	135, 425, 651, 724, 783, 1076, 1084
FspBI	CTAG	2 cut(s)	57, 320
GlaI	GCGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	841
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	7 cut(s)	139, 429, 655, 728, 787, 1080, 1088
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	2 cut(s)	718, 1121
HinfI	GANTC	3 cut(s)	196, 203, 582
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	131, 859, 1075
Hpy166II	GTNNAC	1 cut(s)	967
Hpy188I	TCNGA	1 cut(s)	716
Hpy188III	TCNNGA	7 cut(s)	20, 45, 200, 496, 621, 903, 1103
Hpy8I	GTNNAC	1 cut(s)	967
HpyAV	CCTTC	5 cut(s)	305, 786, 880, 887, 955
HpyCH4V	TGCA	8 cut(s)	76, 214, 222, 236, 425, 526, 936, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	803, 901
Hsp92II	CATG	7 cut(s)	139, 429, 655, 728, 787, 1080, 1088
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
LmnI	GCTCC	5 cut(s)	137, 146, 323, 419, 508
MaeI	CTAG	2 cut(s)	57, 320
MalI	GATC	6 cut(s)	24, 243, 366, 500, 519, 951
MboI	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
MboII	GAAGA	5 cut(s)	368, 647, 983, 989, 992
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	9 cut(s)	34, 48, 302, 356, 771, 809, 814, 860, 995
MlyI	GAGTC	2 cut(s)	212, 576
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	9 cut(s)	360, 382, 700, 755, 799, 875, 895, 927, 1065
MroXI	GAANNNNTTC	2 cut(s)	38, 294
MseI	TTAA	5 cut(s)	173, 536, 588, 770, 945
MslI	CAYNNNNRTG	1 cut(s)	160
MspA1I	CMGCKG	2 cut(s)	480, 956
MspI	CCGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
NlaIII	CATG	7 cut(s)	139, 429, 655, 728, 787, 1080, 1088
NlaIV	GGNNCC	3 cut(s)	268, 325, 415
NspI	RCATGY	2 cut(s)	429, 1088
PdmI	GAANNNNTTC	2 cut(s)	38, 294
PfeI	GAWTC	1 cut(s)	196
PleI	GAGTC	2 cut(s)	211, 576
PpsI	GAGTC	2 cut(s)	211, 576
PspN4I	GGNNCC	3 cut(s)	268, 325, 415
PspPI	GGNCC	3 cut(s)	598, 839, 914
PvuII	CAGCTG	2 cut(s)	480, 956
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	5 cut(s)	173, 536, 588, 770, 945
Sau3AI	GATC	6 cut(s)	22, 241, 364, 498, 517, 949
Sau96I	GGNCC	3 cut(s)	598, 839, 914
SchI	GAGTC	2 cut(s)	212, 576
SduI	GDGCHC	1 cut(s)	143
SinI	GGWCC	2 cut(s)	598, 914
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	28, 200
SmoI	CTYRAG	2 cut(s)	28, 200
Sse9I	AATT	9 cut(s)	34, 48, 302, 356, 771, 809, 814, 860, 995
SsiI	CCGC	1 cut(s)	912
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	57, 320
StyI	CCWWGG	1 cut(s)	56
TasI	AATT	9 cut(s)	34, 48, 302, 356, 771, 809, 814, 860, 995
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	5 cut(s)	173, 536, 588, 770, 945
Tru9I	TTAA	5 cut(s)	173, 536, 588, 770, 945
TspDTI	ATGAA	7 cut(s)	287, 325, 573, 656, 990, 1018, 1127
VpaK11BI	GGWCC	2 cut(s)	598, 914
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	2 cut(s)	429, 1088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	38, 294
XspI	CTAG	2 cut(s)	57, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.