Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

34787921 .. 34788670

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCGTGGGAACTAGTTCTACTGGTACTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACCGGTGCTGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACTCTTCCTCTGTTCCCCATGCACGGTGAGGACATCTTTAGCGACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTGTTCCGGTGGCTCGGGCGGCTACAACGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACCCCTCCGGAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

199

Amino Acids

21.8

Weight (kDa)

4.96

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	3.3e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	578
AciI	CCGC	2 cut(s)	498, 528
AclWI	GGATC	3 cut(s)	141, 330, 343
AfaI	GTAC	2 cut(s)	91, 328
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgeI	ACCGGT	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	425
AhlI	ACTAGT	2 cut(s)	314, 362
AjnI	CCWGG	2 cut(s)	92, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	7, 199, 562, 584
AluI	AGCT	4 cut(s)	7, 199, 562, 584
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	141, 330, 343
Ama87I	CYCGRG	2 cut(s)	261, 523
Aor13HI	TCCGGA	1 cut(s)	578
ApeKI	GCWGC	4 cut(s)	50, 199, 293, 584
AseI	ATTAAT	1 cut(s)	348
AsiGI	ACCGGT	1 cut(s)	371
Asp700I	GAANNNNTTC	2 cut(s)	316, 429
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	404, 464
AvaI	CYCGRG	2 cut(s)	261, 523
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	262, 564
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	62, 186, 280, 571
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	94, 416
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 362
BfaI	CTAG	2 cut(s)	315, 363
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	6 cut(s)	51, 200, 294, 499, 529, 585
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	6 cut(s)	52, 201, 295, 500, 530, 586
Bme1390I	CCNGG	3 cut(s)	55, 94, 416
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	2 cut(s)	261, 523
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	3 cut(s)	245, 337, 358
BmrFI	CCNGG	3 cut(s)	55, 94, 416
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	3 cut(s)	113, 282, 578
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	306, 486
BsaWI	WCCGGW	3 cut(s)	371, 515, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	328, 334
BseAI	TCCGGA	1 cut(s)	578
BseBI	CCWGG	2 cut(s)	94, 416
BseDI	CCNNGG	2 cut(s)	306, 486
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	2 cut(s)	328, 334
BseRI	GAGGAG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	62, 186, 280, 571
BseYI	CCCAGC	1 cut(s)	15
BshTI	ACCGGT	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	2 cut(s)	261, 523
BsiSI	CCGG	4 cut(s)	54, 372, 516, 579
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	261, 523
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 564
Bsp13I	TCCGGA	1 cut(s)	578
Bsp143I	GATC	5 cut(s)	112, 133, 186, 335, 409
Bsp1720I	GCTNAGC	1 cut(s)	563
BspACI	CCGC	2 cut(s)	498, 528
BspCNI	CTCAG	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	578
BspLI	GGNNCC	3 cut(s)	245, 337, 358
BspPI	GGATC	3 cut(s)	141, 330, 343
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	328, 334
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	306, 486
BssMI	GATC	5 cut(s)	112, 133, 186, 335, 409
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 416
Bst4CI	ACNGT	4 cut(s)	207, 452, 512, 539
Bst6I	CTCTTC	2 cut(s)	272, 435
BstDEI	CTNAG	2 cut(s)	563, 597
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	5 cut(s)	115, 136, 189, 338, 412
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	5 cut(s)	112, 133, 186, 335, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	504, 528, 593
BstNI	CCWGG	2 cut(s)	94, 416
BstSCI	CCNGG	3 cut(s)	53, 92, 414
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	62, 186, 280, 571
BstX2I	RGATCY	3 cut(s)	133, 186, 335
BstYI	RGATCY	3 cut(s)	133, 186, 335
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 327
CspAI	ACCGGT	1 cut(s)	371
CviAII	CATG	2 cut(s)	391, 445
CviQI	GTAC	2 cut(s)	90, 327
DdeI	CTNAG	2 cut(s)	563, 597
DpnI	GATC	5 cut(s)	114, 135, 188, 337, 411
DpnII	GATC	5 cut(s)	112, 133, 186, 335, 409
Eam1104I	CTCTTC	2 cut(s)	272, 435
EarI	CTCTTC	2 cut(s)	272, 435
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	2 cut(s)	262, 564
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	562
Eco88I	CYCGRG	2 cut(s)	261, 523
EcoICRI	GAGCTC	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	92, 414
EcoT38I	GRGCYC	2 cut(s)	262, 564
FaeI	CATG	2 cut(s)	394, 448
FaiI	YATR	5 cut(s)	177, 210, 392, 446, 504
FatI	CATG	2 cut(s)	390, 444
Fnu4HI	GCNGC	6 cut(s)	51, 200, 294, 499, 529, 585
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	262, 564
Fsp4HI	GCNGC	6 cut(s)	51, 200, 294, 499, 529, 585
FspBI	CTAG	2 cut(s)	315, 363
GluI	GCNGC	6 cut(s)	51, 200, 294, 499, 529, 585
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HapII	CCGG	4 cut(s)	54, 372, 516, 579
Hin1II	CATG	2 cut(s)	394, 448
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	4 cut(s)	54, 372, 516, 579
HphI	GGTGA	2 cut(s)	404, 464
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 579
Hpy8I	GTNNAC	1 cut(s)	360
HpyCH4III	ACNGT	4 cut(s)	207, 452, 512, 539
HpyCH4V	TGCA	3 cut(s)	202, 285, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	504, 528, 593
HpyF3I	CTNAG	2 cut(s)	563, 597
Hsp92II	CATG	2 cut(s)	394, 448
Kpn2I	TCCGGA	1 cut(s)	578
Kzo9I	GATC	5 cut(s)	112, 133, 186, 335, 409
LmnI	GCTCC	2 cut(s)	4, 581
Lsp1109I	GCAGC	4 cut(s)	62, 186, 280, 571
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	315, 363
MalI	GATC	5 cut(s)	114, 135, 188, 337, 411
MboI	GATC	5 cut(s)	112, 133, 186, 335, 409
MboII	GAAGA	3 cut(s)	289, 419, 422
MflI	RGATCY	3 cut(s)	133, 186, 335
MhlI	GDGCHC	3 cut(s)	262, 306, 564
MluCI	AATT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	578
MroXI	GAANNNNTTC	2 cut(s)	316, 429
MseI	TTAA	2 cut(s)	156, 348
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	4 cut(s)	54, 372, 516, 579
MspR9I	CCNGG	3 cut(s)	55, 94, 416
MvaI	CCWGG	2 cut(s)	94, 416
MwoI	GCNNNNNNNGC	3 cut(s)	504, 528, 593
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	112, 133, 186, 335, 409
NlaIII	CATG	2 cut(s)	394, 448
NlaIV	GGNNCC	3 cut(s)	245, 337, 358
PaeR7I	CTCGAG	1 cut(s)	261
PdmI	GAANNNNTTC	2 cut(s)	316, 429
PfeI	GAWTC	2 cut(s)	100, 123
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	6 cut(s)	52, 201, 295, 500, 530, 586
PshBI	ATTAAT	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	92, 414
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	92, 414
PspN4I	GGNNCC	3 cut(s)	245, 337, 358
PspPI	GGNCC	1 cut(s)	357
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PsuI	RGATCY	3 cut(s)	133, 186, 335
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	91, 328
RsaNI	GTAC	2 cut(s)	90, 327
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	2 cut(s)	156, 348
SatI	GCNGC	6 cut(s)	51, 200, 294, 499, 529, 585
Sau3AI	GATC	5 cut(s)	112, 133, 186, 335, 409
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	3 cut(s)	55, 94, 416
SduI	GDGCHC	3 cut(s)	262, 306, 564
SetI	ASST	9 cut(s)	9, 98, 201, 219, 284, 474, 496, 564, 586
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 557
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 557
SpeI	ACTAGT	2 cut(s)	314, 362
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	498, 528
SspMI	CTAG	2 cut(s)	315, 363
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	3 cut(s)	53, 92, 414
TaaI	ACNGT	4 cut(s)	207, 452, 512, 539
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	349
TauI	GCSGC	2 cut(s)	501, 531
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	2 cut(s)	156, 348
Tru9I	TTAA	2 cut(s)	156, 348
TseI	GCWGC	4 cut(s)	50, 199, 293, 584
TspDTI	ATGAA	2 cut(s)	290, 379
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	357
VspI	ATTAAT	1 cut(s)	348
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 429
XspI	CTAG	2 cut(s)	315, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.