Rroxscaffold_7G00202690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000285
Physical Location & Seq
Reverse (-)
50907075 .. 50917684
10610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202690.1

Sequence Viewer

Length: 189 bp
ATGTTAGAAACAGCTCGGGGACTTTTTCTAGATGTAGGTGCCTCTTGTTATTTCTTGAAGCTTTTTGGATCCTTTGGTAAGCTCGGACGAGGATCCTTCTACGGAGACAGGTTGAGGATGAGGTGGAGGCATCGAGAGGTTGAGTTGCCCGTTCCACCCGTAGTTGATGAGATGGATGCTAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.1

Weight (kDa)

7.94

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47885
fragaria_vesca FvH4_3g09550 FvH4_4g32560
malus_domestica MD01G1172200.v1.1
rosa_chinensis RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AclWI GGATC 4 cut(s) 63, 76, 87, 100
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 14, 61, 82
AluI AGCT 3 cut(s) 14, 61, 82
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 4 cut(s) 63, 76, 87, 100
Ama87I CYCGRG 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 15
BamHI GGATCC 2 cut(s) 68, 92
BanI GGYRCC 1 cut(s) 38
BccI CCATC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 15
BmiI GGNNCC 3 cut(s) 40, 70, 94
BmsI GCATC 2 cut(s) 139, 166
BseGI GGATG 2 cut(s) 123, 181
BshNI GGYRCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 15
Bsp143I GATC 2 cut(s) 68, 92
BspLI GGNNCC 3 cut(s) 40, 70, 94
BspPI GGATC 4 cut(s) 63, 76, 87, 100
BspT107I GGYRCC 1 cut(s) 38
BssMI GATC 2 cut(s) 68, 92
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 123, 181
BstKTI GATC 2 cut(s) 71, 95
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 68, 92
BstX2I RGATCY 2 cut(s) 68, 92
BstYI RGATCY 2 cut(s) 68, 92
BtsCI GGATG 2 cut(s) 123, 181
CviJI RGCY 3 cut(s) 14, 61, 82
CviKI_1 RGCY 3 cut(s) 14, 61, 82
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 70, 94
DpnII GATC 2 cut(s) 68, 92
Eco88I CYCGRG 1 cut(s) 15
FaqI GGGAC 1 cut(s) 33
FokI GGATG 1 cut(s) 130
FspBI CTAG 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 29, 55, 134
HpyAV CCTTC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 186
Kzo9I GATC 2 cut(s) 68, 92
LpnPI CCDG 1 cut(s) 94
LweI GCATC 2 cut(s) 139, 166
MaeI CTAG 1 cut(s) 29
MalI GATC 2 cut(s) 70, 94
MboI GATC 2 cut(s) 68, 92
MflI RGATCY 2 cut(s) 68, 92
MluCI AATT 1 cut(s) 181
MnlI CCTC 6 cut(s) 52, 83, 108, 114, 120, 130
NdeII GATC 2 cut(s) 68, 92
NlaIV GGNNCC 3 cut(s) 40, 70, 94
PspN4I GGNNCC 3 cut(s) 40, 70, 94
PsuI RGATCY 2 cut(s) 68, 92
Sau3AI GATC 2 cut(s) 68, 92
SetI ASST 7 cut(s) 16, 40, 63, 84, 113, 125, 141
SfaNI GCATC 2 cut(s) 139, 166
Sse9I AATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 29
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 117
XbaI TCTAGA 1 cut(s) 28
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.