Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002737.1

Orthogroup ID

OG0000285

Physical Location & Seq

Genomic Coordinates Forward (+)

27280 .. 27951

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002737.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtcttggcaagttggaaaaactgacaaaagtaggtggttggccaactttgtcattcccatgcatatggacttaaatgtcaagggactagaatacgattatacttctgatcttgttggactcatatacaagatagacctatcaagtaataacttatggggagaaataccgaaggagataacaaatctcaccgccttgggtagtttgaatttgtcacataaccgtttgactggaaagataccagatggtatcagaagtttatgtctgttagagactcttgacctctctagtaatcatctacagggtccaattccttcaagcatgacctccatgactttactaagcaaattgaacttgtcacataacaacttttctgggccaattccatcaaccaaccagttccttaccttcaacgatccaacctcatttgaaggaaactcagggctttgtgggcatccattgccaaccgaatgcagcccatcctccaacaatgataaggatccggaggttgaagaagatgaatatgaaaaaatatggttgtatgcaatcacagggttggggttcattgtgggattttgggctgtgtttggcatcttggtgataaagaggtcatggagacatgcttatttcaagtttcttggcaagatgaaaggtaggctctccttctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

223

Amino Acids

25.06

Weight (kDa)

6.06

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47885
fragaria_vesca	FvH4_3g09550 FvH4_4g32560
malus_domestica	MD01G1172200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0353911 RchiOBHm_Chr1g0354141 RchiOBHm_Chr1g0354151 RchiOBHm_Chr1g0354161 RchiOBHm_Chr1g0354191 RchiOBHm_Chr1g0354201 RchiOBHm_Chr1g0354221 RchiOBHm_Chr1g0354271 RchiOBHm_Chr1g0354301 RchiOBHm_Chr1g0354321 RchiOBHm_Chr1g0354371 RchiOBHm_Chr1g0354401 RchiOBHm_Chr1g0354411 RchiOBHm_Chr1g0354451 RchiOBHm_Chr1g0354551 RchiOBHm_Chr1g0359231 RchiOBHm_Chr3g0470501 RchiOBHm_Chr4g0440611 RchiOBHm_Chr4g0440631 RchiOBHm_Chr4g0441421 RchiOBHm_Chr4g0441431 RchiOBHm_Chr5g0015191 RchiOBHm_Chr5g0022441 RchiOBHm_Chr7g0207081
rosa_laevigata	RLG00000009355 RLG00000009356 RLG00000023813 RLG00000024262 RLG00000028199 RLG00000028200 RLG00000028204 RLG00000028209 RLG00000028211 RLG00000028214 RLG00000028216 RLG00000028220 RLG00000028221 RLG00000028223 RLG00000028224 RLG00000028886 RLG00000029706 RLG00000032176
rosa_multiflora	Rmu_co8366321.1_g000001 Rmu_sc0001926.1_g000008 Rmu_sc0001926.1_g000009 Rmu_sc0002115.1_g000006 Rmu_sc0002115.1_g000007 Rmu_sc0002209.1_g000020 Rmu_sc0002737.1_g000005 Rmu_sc0002737.1_g000009 Rmu_sc0002737.1_g000015 Rmu_sc0002737.1_g000016 Rmu_sc0002737.1_g000018 Rmu_sc0002930.1_g000003 Rmu_sc0002930.1_g000005 Rmu_sc0003292.1_g000004 Rmu_sc0003360.1_g000004 Rmu_sc0003360.1_g000005 Rmu_sc0003381.1_g000013 Rmu_sc0004299.1_g000001 Rmu_sc0007159.1_g000001 Rmu_sc0007159.1_g000007 Rmu_sc0009777.1_g000002 Rmu_sc0010755.1_g000002 Rmu_sc0012353.1_g000001 Rmu_sc0012562.1_g000003 Rmu_sc0012562.1_g000004 Rmu_sc0012562.1_g000006 Rmu_sc0012562.1_g000013 Rmu_sc0012562.1_g000021 Rmu_sc0015525.1_g000001 Rmu_sc0015525.1_g000005 Rmu_sc0018378.1_g000001 Rmu_sc0022127.1_g000002 Rmu_sc0022144.1_g000002 Rmu_sc0035791.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056680 Rroxscaffold_1G00061360 Rroxscaffold_3G00236900 Rroxscaffold_4G00300940 Rroxscaffold_4G00301040 Rroxscaffold_4G00301050 Rroxscaffold_4G00301070 Rroxscaffold_4G00301100 Rroxscaffold_4G00301110 Rroxscaffold_4G00301930 Rroxscaffold_4G00301940 Rroxscaffold_4G00301950 Rroxscaffold_7G00202690
rosa_rugosa	Rorug01G0242000 Rorug01G0242100 Rorug01G0242200 Rorug01G0242300 Rorug01G0242700 Rorug01G0242900 Rorug01G0243000 Rorug03G0109600 Rorug03G0109700 Rorug04G0327000 Rorug04G0333500 Rorug04G0333600 Rorug05G0024600 RorugPtG0003000
rosa_samantha	Rh1AG253200 Rh1AG253400 Rh1BG225200 Rh1CG177100 Rh1CG234500 Rh1CG237000 Rh1DG252000 Rh1DG252400 Rh1DG252900 Rh3CG085900 Rh4BG399300 Rh4DG391900
rosa_wichuraiana	Rw1G015760 Rw1G022030 Rw1G022100 Rw1G022120 Rw1G022230 Rw5G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	3 cut(s)	410, 494, 507
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	208, 318, 352, 412, 431, 512, 631
Alw26I	GTCTC	2 cut(s)	266, 610
AlwI	GGATC	3 cut(s)	410, 494, 507
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	42, 377
ApeKI	GCWGC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	305, 377
AsuHPI	GGTGA	2 cut(s)	181, 610
AvaII	GGWCC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	3 cut(s)	239, 394, 487
BcoDI	GTCTC	2 cut(s)	266, 610
BfaI	CTAG	2 cut(s)	89, 288
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	475
BlsI	GCNGC	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	305, 377
BmiI	GGNNCC	2 cut(s)	306, 501
BmsI	GCATC	2 cut(s)	463, 600
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	235, 397
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	454, 479
BseJI	GATNNNNATC	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	235, 397
BseXI	GCAGC	1 cut(s)	486
BshFI	GGCC	2 cut(s)	44, 379
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	266, 610
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	44, 379
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	109, 415, 499
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	44, 379
BspCNI	CTCAG	1 cut(s)	452
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	306, 501
BspPI	GGATC	3 cut(s)	410, 494, 507
BsrDI	GCAATG	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	235, 397
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	109, 415, 499
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	341, 439
BstF5I	GGATG	2 cut(s)	454, 479
BstKTI	GATC	3 cut(s)	112, 418, 502
BstMAI	GTCTC	2 cut(s)	266, 610
BstMBI	GATC	3 cut(s)	109, 415, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 460
BstNSI	RCATGY	1 cut(s)	623
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	486
BstX2I	RGATCY	1 cut(s)	499
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	44, 379
BtsCI	GGATG	2 cut(s)	454, 479
Cfr13I	GGNCC	2 cut(s)	305, 377
CviAII	CATG	5 cut(s)	61, 322, 331, 612, 620
CviJI	RGCY	6 cut(s)	44, 379, 445, 477, 581, 658
CviKI_1	RGCY	6 cut(s)	44, 379, 445, 477, 581, 658
DdeI	CTNAG	2 cut(s)	341, 439
DpnI	GATC	3 cut(s)	111, 417, 501
DpnII	GATC	3 cut(s)	109, 415, 499
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	64, 325, 334, 615, 623
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	5 cut(s)	60, 321, 330, 611, 619
FauNDI	CATATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	475
FokI	GGATG	2 cut(s)	441, 466
Fsp4HI	GCNGC	1 cut(s)	475
FspBI	CTAG	2 cut(s)	89, 288
GluI	GCNGC	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	44, 379
HapII	CCGG	1 cut(s)	503
Hin1II	CATG	5 cut(s)	64, 325, 334, 615, 623
HinfI	GANTC	2 cut(s)	120, 274
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	181, 610
Hpy188I	TCNGA	2 cut(s)	109, 254
Hpy188III	TCNNGA	2 cut(s)	278, 503
HpyAV	CCTTC	4 cut(s)	166, 324, 418, 425
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	64, 474, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 460
HpyF3I	CTNAG	2 cut(s)	341, 439
Hsp92II	CATG	5 cut(s)	64, 325, 334, 615, 623
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	109, 415, 499
LpnPI	CCDG	9 cut(s)	216, 255, 287, 360, 410, 426, 516, 537, 652
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	2 cut(s)	463, 600
MaeI	CTAG	2 cut(s)	89, 288
MaeIII	GTNAC	2 cut(s)	213, 357
MalI	GATC	3 cut(s)	111, 417, 501
MboI	GATC	3 cut(s)	109, 415, 499
MboII	GAAGA	2 cut(s)	524, 527
MflI	RGATCY	1 cut(s)	499
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	4 cut(s)	208, 309, 347, 381
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	114, 268
MmeI	TCCRAC	3 cut(s)	97, 443, 510
MnlI	CCTC	6 cut(s)	293, 337, 433, 493, 499, 600
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	1 cut(s)	66
MroI	TCCGGA	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	3 cut(s)	59, 65, 596
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	451, 460
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	3 cut(s)	109, 415, 499
NlaIII	CATG	5 cut(s)	64, 325, 334, 615, 623
NlaIV	GGNNCC	2 cut(s)	306, 501
NmuCI	GTSAC	2 cut(s)	213, 357
NsiI	ATGCAT	1 cut(s)	66
NspI	RCATGY	1 cut(s)	623
PctI	GAATGC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	476
PleI	GAGTC	2 cut(s)	114, 268
PpsI	GAGTC	2 cut(s)	114, 268
PspN4I	GGNNCC	2 cut(s)	306, 501
PspPI	GGNCC	2 cut(s)	305, 377
PsuI	RGATCY	1 cut(s)	499
RseI	CAYNNNNRTG	3 cut(s)	59, 65, 596
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	475
Sau3AI	GATC	3 cut(s)	109, 415, 499
Sau96I	GGNCC	2 cut(s)	305, 377
SchI	GAGTC	2 cut(s)	114, 268
SetI	ASST	9 cut(s)	38, 141, 285, 329, 410, 425, 510, 611, 655
SfaNI	GCATC	2 cut(s)	463, 600
SfcI	CTRYAG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	3 cut(s)	59, 65, 596
Sse9I	AATT	4 cut(s)	208, 309, 347, 381
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	2 cut(s)	89, 288
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	4 cut(s)	208, 309, 347, 381
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseFI	GTSAC	2 cut(s)	213, 357
TseI	GCWGC	1 cut(s)	474
Tsp45I	GTSAC	2 cut(s)	213, 357
TspDTI	ATGAA	4 cut(s)	534, 540, 553, 662
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	623
XspI	CTAG	2 cut(s)	89, 288
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.