RLG00000019191

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000641
Physical Location & Seq
Reverse (-)
48012769 .. 48014153
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019191

Sequence Viewer

Length: 438 bp
ATGTTGAGCCCCATTTCAAGGAGCTTGAGGAAGAGCTTAAGCTACACTGTACCACCATGGAAGACAATCCTGGAGGAATGTGTAGAGTATGTGAAGGACTACGTCACCGACTGGGATTATGGTGTTAATCTAGAAAGGGCTTCTAACGACGCTGGGGTTTATGCCGAGAGTGTTGAATTGAATGGTGATGACAAAGATGTGTGGATTTCGATGTTGATGATACTCTTCTATTGGATTTTCGAGAGCTTTCTGAAACCGCATCATCTGATCGAAAATGCACTACTTGTCCCATCATCGATCCTACTAGAGAAAGAGAAACCGGATTGCGCAATTCGCCAACAAGCCCTTCACCACAATCCCTCCAACAAGCCTTTCACAGAAACCCAGGCTTCCAGAGATGTCAACGGATTCGAATTCATTGGATTGATTCCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

4.9

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 16 - 69 4.2e-06 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 328
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 18
AflII CTTAAG 1 cut(s) 37
AgsI TTSAA 3 cut(s) 18, 176, 181
AjnI CCWGG 2 cut(s) 69, 384
AjuI GAANNNNNNNTTGG 4 cut(s) 330, 356, 362, 388
AluBI AGCT 4 cut(s) 24, 36, 42, 246
AluI AGCT 4 cut(s) 24, 36, 42, 246
AlwI GGATC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 413
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 97, 197, 341
AsuII TTCGAA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 2 cut(s) 71, 386
BfaI CTAG 2 cut(s) 131, 305
BfrI CTTAAG 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 71, 386
BmrFI CCNGG 2 cut(s) 71, 386
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 92
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 56, 384
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 71, 386
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 56, 384
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 296
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 267, 297
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 1 cut(s) 257
BspDI ATCGAT 1 cut(s) 296
BspPI GGATC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 56, 384
BssMI GATC 2 cut(s) 267, 297
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 71, 386
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 26, 230
BstAFI CTTAAG 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 411
BstDSI CCRYGG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 2 cut(s) 270, 300
BstMBI GATC 2 cut(s) 267, 297
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNI CCWGG 2 cut(s) 71, 386
BstSCI CCNGG 2 cut(s) 69, 384
BstV2I GAAGAC 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 57
CviJI RGCY 9 cut(s) 9, 24, 36, 42, 140, 246, 344, 370, 389
CviKI_1 RGCY 9 cut(s) 9, 24, 36, 42, 140, 246, 344, 370, 389
CviQI GTAC 1 cut(s) 50
DpnI GATC 2 cut(s) 269, 299
DpnII GATC 2 cut(s) 267, 297
Eam1104I CTCTTC 2 cut(s) 26, 230
EarI CTCTTC 2 cut(s) 26, 230
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 69, 384
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 60
FaiI YATR 5 cut(s) 58, 90, 120, 162, 436
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 11
FspBI CTAG 2 cut(s) 131, 305
FspI TGCGCA 1 cut(s) 328
GlaI GCGC 1 cut(s) 328
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 92
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 408, 427
HpaII CCGG 1 cut(s) 320
HphI GGTGA 3 cut(s) 97, 197, 341
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 2 cut(s) 252, 267
Hpy188III TCNNGA 3 cut(s) 131, 241, 393
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 88, 356
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 2 cut(s) 267, 297
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 8 cut(s) 56, 83, 97, 138, 333, 371, 398, 406
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 131, 305
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 269, 299
MboI GATC 2 cut(s) 267, 297
MboII GAAGA 3 cut(s) 43, 73, 217
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 176, 330, 413
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 3 cut(s) 21, 67, 370
MseI TTAA 2 cut(s) 38, 126
MspCI CTTAAG 1 cut(s) 37
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 71, 386
MvaI CCWGG 2 cut(s) 71, 386
MwoI GCNNNNNNNGC 1 cut(s) 333
NcoI CCATGG 1 cut(s) 56
NdeII GATC 2 cut(s) 267, 297
NlaIII CATG 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 103
NsbI TGCGCA 1 cut(s) 328
NspV TTCGAA 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 408, 427
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 69, 384
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 69, 384
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 38, 126
Sau3AI GATC 2 cut(s) 267, 297
ScrFI CCNGG 2 cut(s) 71, 386
SduI GDGCHC 1 cut(s) 11
SetI ASST 5 cut(s) 26, 38, 44, 105, 248
SfaNI GCATC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 25, 37
SmoI CTYRAG 2 cut(s) 25, 37
Sse9I AATT 3 cut(s) 176, 330, 413
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 131, 305
StyD4I CCNGG 2 cut(s) 69, 384
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 105
TaqI TCGA 5 cut(s) 209, 240, 270, 296, 411
TasI AATT 3 cut(s) 176, 330, 413
TfiI GAWTC 2 cut(s) 408, 427
Tru1I TTAA 2 cut(s) 38, 126
Tru9I TTAA 2 cut(s) 38, 126
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 406
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 37
XapI RAATTY 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 130
XspI CTAG 2 cut(s) 131, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.