Rorug02G0537600
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000641
Physical Location & Seq
Forward (+)
66679507 .. 66679935
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0537600.1

Sequence Viewer

Length: 429 bp
ATGTTCAGATTGATAAGCATCGTGAGAATTATCTTGGCCACAGTATCAAGGCCCCTGTTGGTAGATGGCAAAAGGGTAAGGATCTACACTGGTATAACAGAGACAAAAAAAACATGGAGTGCCGAAATGGTTGCAGCAAAAGAGGAGATTCAAAGAATTAAGGAGAAAGAGGATCAGGCTATGAGGGAGGCTCTTGGACTAGCTCCTAAGCGTGCAAACCGAGCTCAAGGTAATCAACTTGATAAGCATGAGTTCTCAGAACTTGTGAAGCAAGGTTCTACTGCAGAGGACTTGGGTGAAGGGCATGCAGAAGCAGCACACATACATGGTCTTGGTTTTTCAAGAGCACCTGTCCCTTGGGATGATTCAGCTTCTCTTCAACCTACAGTCAATGGAGGTGCACCTGAAATGGGATATTCCTGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.55

Weight (kDa)

6.92

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 89, 180
AcoI YGGCCR 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 3 cut(s) 152, 342, 380
AluBI AGCT 3 cut(s) 203, 224, 371
AluI AGCT 3 cut(s) 203, 224, 371
Alw21I GWGCWC 3 cut(s) 226, 349, 403
Alw26I GTCTC 1 cut(s) 95
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 2 cut(s) 89, 180
AoxI GGCC 2 cut(s) 36, 50
ApaLI GTGCAC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 134, 314
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 403
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 3 cut(s) 226, 349, 403
BbvI GCAGC 2 cut(s) 146, 326
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 282, 384
BisI GCNGC 2 cut(s) 135, 315
BlsI GCNGC 2 cut(s) 136, 316
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 146, 326
BshFI GGCC 2 cut(s) 38, 52
BsiHKAI GWGCWC 3 cut(s) 226, 349, 403
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 2 cut(s) 38, 52
Bsp1286I GDGCHC 3 cut(s) 226, 349, 403
Bsp143I GATC 2 cut(s) 81, 172
BspANI GGCC 2 cut(s) 38, 52
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 53
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 2 cut(s) 89, 180
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 2 cut(s) 81, 172
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 43, 388
Bst6I CTCTTC 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 213, 306
BstDEI CTNAG 2 cut(s) 207, 256
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 84, 175
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 81, 172
BstMWI GCNNNNNNNGC 2 cut(s) 221, 314
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 2 cut(s) 282, 384
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 146, 326
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 38, 52
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 213, 306
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 4 cut(s) 114, 248, 305, 326
CviJI RGCY 7 cut(s) 38, 52, 179, 191, 203, 224, 371
CviKI_1 RGCY 7 cut(s) 38, 52, 179, 191, 203, 224, 371
DdeI CTNAG 2 cut(s) 207, 256
DpnI GATC 2 cut(s) 83, 174
DpnII GATC 2 cut(s) 81, 172
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 4 cut(s) 117, 251, 308, 329
FaiI YATR 7 cut(s) 95, 115, 182, 249, 306, 323, 327
FaqI GGGAC 1 cut(s) 338
FatI CATG 4 cut(s) 113, 247, 304, 325
Fnu4HI GCNGC 2 cut(s) 135, 315
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 135, 315
FspBI CTAG 1 cut(s) 200
GluI GCNGC 2 cut(s) 135, 315
HaeIII GGCC 2 cut(s) 38, 52
Hin1II CATG 4 cut(s) 117, 251, 308, 329
HinfI GANTC 2 cut(s) 148, 365
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 2 cut(s) 8, 259
Hpy188III TCNNGA 2 cut(s) 22, 342
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 43, 388
HpyCH4V TGCA 5 cut(s) 134, 215, 284, 308, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 314
HpyF3I CTNAG 2 cut(s) 207, 256
Hsp92II CATG 4 cut(s) 117, 251, 308, 329
Kzo9I GATC 2 cut(s) 81, 172
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 68, 75, 161, 363, 417
Lsp1109I GCAGC 2 cut(s) 146, 326
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 200
MalI GATC 2 cut(s) 83, 174
MboI GATC 2 cut(s) 81, 172
MboII GAAGA 1 cut(s) 368
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 3 cut(s) 226, 349, 403
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 2 cut(s) 27, 156
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 6 cut(s) 136, 163, 177, 181, 280, 389
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 221, 314
NdeII GATC 2 cut(s) 81, 172
NlaIII CATG 4 cut(s) 117, 251, 308, 329
NlaIV GGNNCC 1 cut(s) 53
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 148, 365
PkrI GCNGC 2 cut(s) 136, 316
Psp124BI GAGCTC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 51
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 135, 315
Sau3AI GATC 2 cut(s) 81, 172
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 3 cut(s) 226, 349, 403
SetI ASST 9 cut(s) 205, 226, 232, 277, 352, 373, 385, 400, 406
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 2 cut(s) 282, 384
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SphI GCATGC 1 cut(s) 308
Sse9I AATT 2 cut(s) 27, 156
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 226
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 43, 388
TasI AATT 2 cut(s) 27, 156
TfiI GAWTC 2 cut(s) 148, 365
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 94
TseI GCWGC 2 cut(s) 134, 314
TspRI CASTG 1 cut(s) 94
VneI GTGCAC 1 cut(s) 399
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.