pycom111g03980

receptor-like protein kinase At5g15080

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000641
Physical Location & Seq
Reverse (-)
2390068 .. 2392203
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03980.2

Sequence Viewer

Length: 690 bp
ATGGGATTGGAACGTGGTGCTTCTGTTGTATGTAAGAATGTCGGAAAATCAAAGGGAAAGAAAAAGAAAGATGATCAAGATGAAGTGACAGGATGTTGGATGAAGTTAAGGTTCATGGGGATGTGCATGTCTCCAAAGACCAAACTGAATAGGCCTACAAGTGGAACTAGCTCACCAGCTGGGGAAAGTAAAGGTACAAATGACTCGATCAAAGACCAGCCAGCTGCTCCAGTTGCTTCGTCTTCATCCACCAGTAACACAGGAAGTACTGTGTCTACTCCCAAGGCAGCTGAGGAACTGAAAGTTGCTTCTCAGCTACGAAAATTCACCTTTGATGAGCTTAAGTCTGTAACAAGGAATTTTAGACCTGTGAATCTTCTGGGCGAGGGTGGATTTGGTTGTGTATATAAAGGCTGGATTGACGAACATGGAACTACTCCAGTAAAACCTGGAGCTGGGCTTGCAGTTGCCGTAAAGACTCTGAACCATGAGGGACTTCAAGGTCATAAAGAATGGCTGGCTGAAGTTAATTATCTTGGCAACCTACTTCATCCAAATTTAGTCAAGCTATATGGTTATTGCATTGAGGATGATCAAAGGTTACTTGTCTATGAGTTTATGCCTCGAGGAAGCTTGGAGAATCACCTCTTTAGAAGTATGTGCTCAAAACTATATCTCCTCGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

25.05

Weight (kDa)

9.05

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 501
AbsI CCTCGAGG 1 cut(s) 624
AccI GTMKAC 1 cut(s) 275
AcsI RAATTY 4 cut(s) 323, 358, 556, 684
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 2 cut(s) 196, 268
AfiI CCNNNNNNNGG 2 cut(s) 161, 455
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 1 cut(s) 500
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 9 cut(s) 171, 179, 224, 290, 316, 340, 455, 568, 633
AluI AGCT 9 cut(s) 171, 179, 224, 290, 316, 340, 455, 568, 633
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 224, 287
ApoI RAATTY 4 cut(s) 323, 358, 556, 684
AsuHPI GGTGA 3 cut(s) 165, 319, 635
AvaI CYCGRG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 665
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 211, 299
BceAI ACGGC 1 cut(s) 455
BciT130I CCWGG 1 cut(s) 450
BclI TGATCA 2 cut(s) 73, 592
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 341
BisI GCNGC 2 cut(s) 225, 288
BlsI GCNGC 2 cut(s) 226, 289
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 450
BmeT110I CYCGRG 1 cut(s) 624
BmrFI CCNGG 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 3 cut(s) 213, 423, 471
Bpu10I CCTNAGC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 455
Bse1I ACTGG 3 cut(s) 230, 252, 440
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 6 cut(s) 98, 105, 126, 245, 550, 595
BseLI CCNNNNNNNGG 2 cut(s) 161, 455
BseMII CTCAG 2 cut(s) 282, 326
BseNI ACTGG 3 cut(s) 230, 252, 440
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 2 cut(s) 211, 299
BseYI CCCAGC 2 cut(s) 179, 455
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 161, 455
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 665
Bsp143I GATC 3 cut(s) 73, 207, 592
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 283, 325
BspTI CTTAAG 1 cut(s) 341
BsrI ACTGG 3 cut(s) 230, 252, 440
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 73, 207, 592
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 271
BstAFI CTTAAG 1 cut(s) 341
BstC8I GCNNGC 3 cut(s) 222, 462, 519
BstDEI CTNAG 2 cut(s) 291, 312
BstF5I GGATG 6 cut(s) 98, 105, 126, 245, 550, 595
BstKTI GATC 3 cut(s) 76, 210, 595
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 73, 207, 592
BstMWI GCNNNNNNNGC 2 cut(s) 233, 461
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 211, 299
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 6 cut(s) 98, 105, 126, 245, 550, 595
Cac8I GCNNGC 3 cut(s) 222, 462, 519
Csp6I GTAC 2 cut(s) 195, 267
CviAII CATG 4 cut(s) 115, 127, 428, 488
CviQI GTAC 2 cut(s) 195, 267
DdeI CTNAG 2 cut(s) 291, 312
DpnI GATC 3 cut(s) 75, 209, 594
DpnII GATC 3 cut(s) 73, 207, 592
DrdI GACNNNNNNGTC 1 cut(s) 501
DseDI GACNNNNNNGTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 4 cut(s) 118, 130, 431, 491
FaqI GGGAC 1 cut(s) 507
FatI CATG 4 cut(s) 114, 126, 427, 487
FbaI TGATCA 2 cut(s) 73, 592
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 225, 288
FokI GGATG 6 cut(s) 105, 112, 133, 232, 537, 602
Fsp4HI GCNGC 2 cut(s) 225, 288
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 225, 288
GsaI CCCAGC 2 cut(s) 183, 459
GsuI CTGGAG 3 cut(s) 213, 423, 471
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 4 cut(s) 118, 130, 431, 491
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 4 cut(s) 203, 373, 478, 640
HphI GGTGA 3 cut(s) 165, 319, 635
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 44, 483
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 126, 464, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 461
HpyF3I CTNAG 2 cut(s) 291, 312
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 4 cut(s) 118, 130, 431, 491
Ksp22I TGATCA 2 cut(s) 73, 592
Kzo9I GATC 3 cut(s) 73, 207, 592
LmnI GCTCC 2 cut(s) 232, 452
Lsp1109I GCAGC 2 cut(s) 211, 299
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 4 cut(s) 85, 254, 349, 600
MalI GATC 3 cut(s) 75, 209, 594
MboI GATC 3 cut(s) 73, 207, 592
MboII GAAGA 2 cut(s) 234, 368
MhlI GDGCHC 1 cut(s) 665
MluCI AATT 5 cut(s) 323, 358, 529, 556, 684
MlyI GAGTC 2 cut(s) 197, 472
MmeI TCCRAC 2 cut(s) 22, 77
MnlI CCTC 8 cut(s) 286, 379, 484, 580, 620, 633, 656, 689
MseI TTAA 3 cut(s) 107, 342, 528
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 3 cut(s) 179, 224, 290
MspCI CTTAAG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 233, 461
NdeII GATC 3 cut(s) 73, 207, 592
NlaIII CATG 4 cut(s) 118, 130, 431, 491
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 624
PceI AGGCCT 1 cut(s) 154
PfeI GAWTC 2 cut(s) 373, 640
PkrI GCNGC 2 cut(s) 226, 289
PleI GAGTC 2 cut(s) 197, 472
PpsI GAGTC 2 cut(s) 197, 472
Psp6I CCWGG 1 cut(s) 448
PspFI CCCAGC 2 cut(s) 179, 455
PspGI CCWGG 1 cut(s) 448
PspXI VCTCGAGB 1 cut(s) 624
PvuII CAGCTG 3 cut(s) 179, 224, 290
RsaI GTAC 2 cut(s) 196, 268
RsaNI GTAC 2 cut(s) 195, 267
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 3 cut(s) 107, 342, 528
SatI GCNGC 2 cut(s) 225, 288
Sau3AI GATC 3 cut(s) 73, 207, 592
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 2 cut(s) 197, 472
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 665
Sfr274I CTCGAG 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 341, 624
SmoI CTYRAG 2 cut(s) 341, 624
Sse9I AATT 5 cut(s) 323, 358, 529, 556, 684
SseBI AGGCCT 1 cut(s) 154
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 206, 625, 681
TasI AATT 5 cut(s) 323, 358, 529, 556, 684
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 373, 640
Tru1I TTAA 3 cut(s) 107, 342, 528
Tru9I TTAA 3 cut(s) 107, 342, 528
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 224, 287
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 96, 103, 116, 234, 539
Vha464I CTTAAG 1 cut(s) 341
XapI RAATTY 4 cut(s) 323, 358, 556, 684
XceI RCATGY 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 624
XmiI GTMKAC 1 cut(s) 275
XspI CTAG 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.