Rmu_sc0008018.1_g000004

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008018.1
OG0000641
Physical Location & Seq
Reverse (-)
10729 .. 13285
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008018.1_g000004.1.cds

Sequence Viewer

Length: 1383 bp
atggatcggtaccagagagtggagaagccaagagcaaagacgccaattgatgagaatgagattaggattacgagccatgggaggatgcgaaactacatcacttacgccatgactctgcttcagtttggttttgcagaaatcaaatctacaaatgatacaagcagagaccaaccgacggctactgcagtgtctaactcaaccactagtaacacagaaagtaatgcatccacttcaaaatttgaagaggaacttaaagttgcttcaaggttgcgaaaatttgcttttaacgatcttaaattggcaacaagaaatttcagacctgaaagtcttcttggtgaaggtggttttggttgtgtgttcaaggggtggatagaagaaaatggaactgctccagtcaaacctggcacaggacttactgttgcggttaaaactcttaatcatgatgggcttcagggtcataaagaatggctggctgaagtaaatttccttggtgaccttgtccatccaaacttggtaaaacttattggatactgcattgaggatgatcaaaggctgctagtgtatgagttcatgcctcgagggagcttggagaaccacctatttaggaggtccctgcctcttccatggtctattagaatgaaaattgcattgggtgcggcaaaaggtcttgcttttcttcatgaggaggcagaaagacctgtgatttatcgtgactttaaaacctccaacatcttattggatgcagattacaatgccaaactttctgattttggacttgccaaagatggcccggagggtgataaaactcatgtctccacacgtgtgatgggaacttatggttatgcagctccagaatatgtaatgactggacatcttacatcgaggagtgatgtctatagttttggcgtagttttacttgagatgctgacaggcagaagatctatggacaaaaatcgacctaatggtgaacataaccttgtggaatgggctcgaccacatctaggagatagaagaagattctaccgattaatagaccctcggctggaaggtcacttttcaataaaaggtgtacagaaagctgcacaactagctgcccattgccttagtcgagatccaaaagcaaggcccctaatgagcgatgttgttgaagcattaaagccattgccaaacctcaaggatatggcaagctcatcatattatttccagaccatgcaaggtgaccgagttggatccagtccgaacaccagaaatggtgtcagaacacaaggaggattgcttacaaggaatgggcacaggagcctatcaataccaaatggctcccatgcttctccatatcaccatcaatttccccatccatctccgaaacctaatggaaaaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

460

Amino Acids

51.57

Weight (kDa)

9.43

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 324
AbsI CCTCGAGG 1 cut(s) 576
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 19
AciI CCGC 2 cut(s) 422, 656
AclWI GGATC 4 cut(s) 12, 1106, 1224, 1237
AcsI RAATTY 4 cut(s) 236, 275, 310, 481
AcuI CTGAAG 3 cut(s) 104, 434, 495
AcvI CACGTG 1 cut(s) 821
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 2 cut(s) 11, 1071
AfiI CCNNNNNNNGG 5 cut(s) 19, 175, 407, 1001, 1042
AflIII ACRYGT 2 cut(s) 818, 820
AgsI TTSAA 6 cut(s) 234, 242, 264, 361, 1059, 1148
AhlI ACTAGT 1 cut(s) 203
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 6 cut(s) 315, 330, 347, 362, 632, 664
AleI CACNNNNGTG 1 cut(s) 821
AluBI AGCT 5 cut(s) 585, 848, 1079, 1091, 1188
AluI AGCT 5 cut(s) 585, 848, 1079, 1091, 1188
Alw26I GTCTC 2 cut(s) 159, 817
AlwI GGATC 4 cut(s) 12, 1106, 1224, 1237
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 2 cut(s) 787, 1124
ApeKI GCWGC 4 cut(s) 553, 845, 1079, 1091
ApoI RAATTY 4 cut(s) 236, 275, 310, 481
AseI ATTAAT 1 cut(s) 1028
Asp700I GAANNNNTTC 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 9
AspS9I GGNCC 3 cut(s) 609, 788, 1125
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 6 cut(s) 347, 503, 809, 977, 1229, 1328
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 1293
BamHI GGATCC 1 cut(s) 1229
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 991
BbrPI CACGTG 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 540, 857, 1066, 1078
BccI CCATC 7 cut(s) 437, 510, 779, 820, 1347, 1359, 1363
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 1 cut(s) 521
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 2 cut(s) 159, 817
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 4 cut(s) 204, 557, 1001, 1088
BfmI CTRYAG 2 cut(s) 183, 895
BfuI GTATCC 1 cut(s) 521
BglII AGATCT 1 cut(s) 938
BisI GCNGC 5 cut(s) 554, 657, 846, 1080, 1092
BlsI GCNGC 5 cut(s) 555, 658, 847, 1081, 1093
Bme1390I CCNGG 2 cut(s) 402, 791
Bme18I GGWCC 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 3 cut(s) 609, 788, 1125
BmiI GGNNCC 6 cut(s) 11, 611, 1127, 1231, 1298, 1318
BmrFI CCNGG 2 cut(s) 402, 791
BmsI GCATC 4 cut(s) 75, 233, 730, 912
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 2 cut(s) 375, 834
BpuEI CTTGAG 2 cut(s) 938, 1157
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 821
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 4 cut(s) 76, 487, 623, 1037
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 175, 407, 1001, 1042
Bse1I ACTGG 3 cut(s) 392, 871, 1233
Bse3DI GCAATG 2 cut(s) 1096, 1160
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 4 cut(s) 76, 487, 623, 1037
BseGI GGATG 6 cut(s) 90, 224, 502, 547, 745, 1351
BseLI CCNNNNNNNGG 5 cut(s) 19, 175, 407, 1001, 1042
BseMI GCAATG 2 cut(s) 1096, 1160
BseNI ACTGG 3 cut(s) 392, 871, 1233
BseRI GAGGAG 2 cut(s) 698, 898
BseSI GKGCMC 1 cut(s) 1293
BseXI GCAGC 4 cut(s) 540, 857, 1066, 1078
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 2 cut(s) 789, 1126
BshNI GGYRCC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 1 cut(s) 791
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 5 cut(s) 19, 175, 407, 1001, 1042
BsmAI GTCTC 2 cut(s) 159, 817
BsmFI GGGAC 1 cut(s) 595
BsnI GGCC 2 cut(s) 789, 1126
Bso31I GGTCTC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 576
Bsp1286I GDGCHC 2 cut(s) 991, 1293
Bsp1407I TGTACA 1 cut(s) 1069
Bsp143I GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
Bsp19I CCATGG 2 cut(s) 76, 623
BspACI CCGC 2 cut(s) 422, 656
BspANI GGCC 2 cut(s) 789, 1126
BspHI TCATGA 2 cut(s) 439, 679
BspLI GGNNCC 6 cut(s) 11, 611, 1127, 1231, 1298, 1318
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 4 cut(s) 12, 1106, 1224, 1237
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 1096, 1160
BsrGI TGTACA 1 cut(s) 1069
BsrI ACTGG 3 cut(s) 392, 871, 1233
BssECI CCNNGG 4 cut(s) 76, 487, 623, 1037
BssMI GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 3 cut(s) 76, 487, 623
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 237, 624
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 1069
BstBAI YACGTR 1 cut(s) 821
BstC8I GCNNGC 2 cut(s) 471, 1186
BstDEI CTNAG 1 cut(s) 1103
BstDSI CCRYGG 2 cut(s) 76, 623
BstEII GGTNACC 2 cut(s) 491, 1217
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 6 cut(s) 90, 224, 502, 547, 745, 1351
BstKTI GATC 6 cut(s) 7, 292, 547, 941, 1114, 1232
BstMAI GTCTC 2 cut(s) 159, 817
BstMBI GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
BstMWI GCNNNNNNNGC 2 cut(s) 653, 1088
BstNI CCWGG 1 cut(s) 402
BstPI GGTNACC 2 cut(s) 491, 1217
BstSCI CCNGG 2 cut(s) 400, 789
BstSFI CTRYAG 2 cut(s) 183, 895
BstSLI GKGCMC 1 cut(s) 1293
BstV1I GCAGC 4 cut(s) 540, 857, 1066, 1078
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 3 cut(s) 938, 1111, 1229
BstYI RGATCY 3 cut(s) 938, 1111, 1229
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 2 cut(s) 789, 1126
BtgI CCRYGG 2 cut(s) 76, 623
BtgZI GCGATG 1 cut(s) 1152
BtsCI GGATG 6 cut(s) 90, 224, 502, 547, 745, 1351
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 471, 1186
CciI TCATGA 2 cut(s) 439, 679
Cfr13I GGNCC 3 cut(s) 609, 788, 1125
CseI GACGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 10, 1070
CviAII CATG 9 cut(s) 77, 109, 440, 571, 624, 680, 809, 1210, 1322
CviQI GTAC 2 cut(s) 10, 1070
DdeI CTNAG 1 cut(s) 1103
DpnI GATC 6 cut(s) 6, 291, 546, 940, 1113, 1231
DpnII GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
DraI TTTAAA 1 cut(s) 718
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 237, 624
EarI CTCTTC 2 cut(s) 237, 624
Eco130I CCWWGG 3 cut(s) 76, 487, 623
Eco24I GRGCYC 1 cut(s) 991
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 3 cut(s) 104, 434, 495
Eco72I CACGTG 1 cut(s) 821
Eco88I CYCGRG 1 cut(s) 576
Eco91I GGTNACC 2 cut(s) 491, 1217
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 2 cut(s) 609, 1125
EcoO65I GGTNACC 2 cut(s) 491, 1217
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 3 cut(s) 76, 487, 623
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 991
ErhI CCWWGG 3 cut(s) 76, 487, 623
FaeI CATG 9 cut(s) 80, 112, 443, 574, 627, 683, 812, 1213, 1325
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 1 cut(s) 595
FatI CATG 9 cut(s) 76, 108, 439, 570, 623, 679, 808, 1209, 1321
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 5 cut(s) 554, 657, 846, 1080, 1092
FokI GGATG 6 cut(s) 97, 211, 489, 554, 752, 1338
FriOI GRGCYC 1 cut(s) 991
Fsp4HI GCNGC 5 cut(s) 554, 657, 846, 1080, 1092
FspBI CTAG 4 cut(s) 204, 557, 1001, 1088
GluI GCNGC 5 cut(s) 554, 657, 846, 1080, 1092
GsuI CTGGAG 2 cut(s) 375, 834
HaeIII GGCC 2 cut(s) 789, 1126
HapII CCGG 1 cut(s) 791
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 9 cut(s) 80, 112, 443, 574, 627, 683, 812, 1213, 1325
HinfI GANTC 2 cut(s) 112, 1017
HpaII CCGG 1 cut(s) 791
HphI GGTGA 6 cut(s) 347, 503, 809, 977, 1229, 1328
Hpy166II GTNNAC 2 cut(s) 968, 1070
Hpy188I TCNGA 5 cut(s) 317, 766, 1239, 1259, 1362
Hpy188III TCNNGA 6 cut(s) 440, 680, 710, 851, 1109, 1204
Hpy8I GTNNAC 2 cut(s) 968, 1070
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 332, 1040
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 9 cut(s) 134, 185, 224, 534, 647, 743, 845, 1082, 1213
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 1088
HpyF3I CTNAG 1 cut(s) 1103
HpySE526I ACGT 1 cut(s) 820
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 9 cut(s) 80, 112, 443, 574, 627, 683, 812, 1213, 1325
KpnI GGTACC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
LmnI GCTCC 5 cut(s) 394, 582, 853, 1296, 1322
Lsp1109I GCAGC 4 cut(s) 540, 857, 1066, 1078
LweI GCATC 4 cut(s) 75, 233, 730, 912
MaeI CTAG 4 cut(s) 204, 557, 1001, 1088
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 5 cut(s) 206, 491, 710, 1049, 1217
MalI GATC 6 cut(s) 6, 291, 546, 940, 1113, 1231
MboI GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
MboII GAAGA 8 cut(s) 254, 320, 386, 611, 668, 948, 1023, 1026
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 3 cut(s) 938, 1111, 1229
MhlI GDGCHC 2 cut(s) 991, 1293
MluCI AATT 8 cut(s) 45, 236, 275, 296, 310, 481, 642, 1343
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 750, 1207
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 9 cut(s) 252, 285, 294, 426, 435, 717, 1028, 1154, 1381
MslI CAYNNNNRTG 1 cut(s) 821
MspI CCGG 1 cut(s) 791
MspR9I CCNGG 2 cut(s) 402, 791
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 653, 1088
NciI CCSGG 1 cut(s) 791
NcoI CCATGG 2 cut(s) 76, 623
NdeII GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
NlaIII CATG 9 cut(s) 80, 112, 443, 574, 627, 683, 812, 1213, 1325
NlaIV GGNNCC 6 cut(s) 11, 611, 1127, 1231, 1298, 1318
NmeAIII GCCGAG 1 cut(s) 1018
NmuCI GTSAC 4 cut(s) 491, 710, 1049, 1217
NsiI ATGCAT 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 576
PagI TCATGA 2 cut(s) 439, 679
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 1017
PflFI GACNNNGTC 1 cut(s) 497
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 5 cut(s) 555, 658, 847, 1081, 1093
PleI GAGTC 1 cut(s) 106
PmaCI CACGTG 1 cut(s) 821
PmlI CACGTG 1 cut(s) 821
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 400
PspCI CACGTG 1 cut(s) 821
PspEI GGTNACC 2 cut(s) 491, 1217
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 6 cut(s) 11, 611, 1127, 1231, 1298, 1318
PspPI GGNCC 3 cut(s) 609, 788, 1125
PspPPI RGGWCCY 1 cut(s) 609
PspXI VCTCGAGB 1 cut(s) 576
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 3 cut(s) 938, 1111, 1229
PsyI GACNNNGTC 1 cut(s) 497
RsaI GTAC 2 cut(s) 11, 1071
RsaNI GTAC 2 cut(s) 10, 1070
RseI CAYNNNNRTG 1 cut(s) 821
SaqAI TTAA 9 cut(s) 252, 285, 294, 426, 435, 717, 1028, 1154, 1381
SatI GCNGC 5 cut(s) 554, 657, 846, 1080, 1092
Sau3AI GATC 6 cut(s) 4, 289, 544, 938, 1111, 1229
Sau96I GGNCC 3 cut(s) 609, 788, 1125
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 402, 791
SduI GDGCHC 2 cut(s) 991, 1293
SfaNI GCATC 4 cut(s) 75, 233, 730, 912
SfcI CTRYAG 2 cut(s) 183, 895
Sfr274I CTCGAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 609
SlaI CTCGAG 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 3 cut(s) 576, 917, 1172
SmoI CTYRAG 3 cut(s) 576, 917, 1172
SpeI ACTAGT 1 cut(s) 203
Sse9I AATT 8 cut(s) 45, 236, 275, 296, 310, 481, 642, 1343
SsiI CCGC 2 cut(s) 422, 656
SspMI CTAG 4 cut(s) 204, 557, 1001, 1088
StyD4I CCNGG 2 cut(s) 400, 789
StyI CCWWGG 3 cut(s) 76, 487, 623
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 823
TaqI TCGA 5 cut(s) 577, 881, 955, 991, 1108
TaqII GACCGA 1 cut(s) 1236
TasI AATT 8 cut(s) 45, 236, 275, 296, 310, 481, 642, 1343
TatI WGTACW 1 cut(s) 1069
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 1 cut(s) 1017
Tru1I TTAA 9 cut(s) 252, 285, 294, 426, 435, 717, 1028, 1154, 1381
Tru9I TTAA 9 cut(s) 252, 285, 294, 426, 435, 717, 1028, 1154, 1381
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 4 cut(s) 491, 710, 1049, 1217
TseI GCWGC 4 cut(s) 553, 845, 1079, 1091
Tsp45I GTSAC 4 cut(s) 491, 710, 1049, 1217
TspDTI ATGAA 3 cut(s) 559, 653, 668
TspRI CASTG 1 cut(s) 192
Tth111I GACNNNGTC 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 609
VspI ATTAAT 1 cut(s) 1028
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 4 cut(s) 236, 275, 310, 481
XcmI CCANNNNNNNNNTGG 2 cut(s) 733, 823
XhoI CTCGAG 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 4 cut(s) 204, 557, 1001, 1088
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.