Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000641

Physical Location & Seq

Genomic Coordinates Forward (+)

57780600 .. 57781258

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004259

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTTGTTGATCATAAGCATGCCGAGATCCATTTCAAGGAGCTTGAGGAAGAGCTTAAGCTACACTGTACCAGCTGGAGGTTTTCGGTGGAGGCTAACAATGTGAATCCATGGAAGACAATCCTAGAGGAATGTGTAGGGTATGTGAAGGACTATATCACCGGCCGGGATTATGGTGTTGATCCGGAGAGGGTTTCCAATGATGCTGGGGTTTATGCCGAGAGTGTTGAATTGAGTGGTGATGGCAAAGATATGTGGATTTCGATGTTGATGATACTCTTCTATTGGAGTTTCGAGAGCTTTGTGAAACTGGTTCTCCGAATCTGGTTGGGCCGTATGATTTTGTTGAGTTTGGCTTTGTTGTTCTTGTGTGGTGTTGGATTTTCGATTGCAGATTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

135

Amino Acids

15.5

Weight (kDa)

5.01

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	9 - 87	1e-15	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01300 AT3G28690 AT3G28690 AT3G28690 AT5G15080
fragaria_vesca	FvH4_1g02650 FvH4_4g31950 FvH4_4g31950 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49270
malus_domestica	MD09G1046600.v1.1 MD09G1048900.v1.1 MD13G1078900.v1.1 MD15G1168500.v1.1 MD16G1078600.v1.1 MD17G1047100.v1.1 MD17G1048900.v1.1
prunus_persica	Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.3G270000_v2.0.a1 Prupe.3G272000_v2.0.a1 Prupe.7G248000_v2.0.a1
pyrus_communis	pycom111g03700 pycom111g03970 pycom111g03980 pycom13g06850 pycom15g15030 pycom16g06800 pycom17g04200 pycom17g04390
rosa_chinensis	RchiOBHm_Chr2g0087681 RchiOBHm_Chr2g0104451 RchiOBHm_Chr2g0168861 RchiOBHm_Chr2g0169151 RchiOBHm_Chr4g0440601
rosa_laevigata	RLG00000004259 RLG00000015892 RLG00000019191 RLG00000037088
rosa_multiflora	Rmu_sc0000358.1_g000007 Rmu_sc0008018.1_g000004 Rmu_ssc0000393.1_g000008
rosa_roxburghii	Rroxscaffold_1G00021930 Rroxscaffold_2G00082390 Rroxscaffold_2G00082620 Rroxscaffold_2G00153290 Rroxscaffold_5G00381430
rosa_rugosa	Rorug01G0478300 Rorug02G0535700 Rorug02G0535800 Rorug02G0537600 Rorug04G0327000
rosa_samantha	Rh2AG032300 Rh2AG606800 Rh2AG609200 Rh2BG031400 Rh2BG619600 Rh2BG622200 Rh2CG031800 Rh2CG588200 Rh2CG590900 Rh2DG031700 Rh2DG630200 Rh2DG632800 Rh4AG378900 Rh4CG406200 Rh4DG385400 Rh6CG197400
rosa_wichuraiana	Rw2G002520 Rw2G050310 Rw2G050530 Rw4G032540 Rw4G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AclWI	GGATC	2 cut(s)	22, 176
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	2 cut(s)	37, 78
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	37, 230
AluBI	AGCT	5 cut(s)	43, 55, 61, 75, 300
AluI	AGCT	5 cut(s)	43, 55, 61, 75, 300
AlwI	GGATC	2 cut(s)	22, 176
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	163, 331
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	151, 251
BbsI	GAAGAC	1 cut(s)	122
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 78
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	37, 78
BseNI	ACTGG	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	165, 333
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	162, 166, 185
BslI	CCNNNNNNNGG	2 cut(s)	37, 78
BsnI	GGCC	2 cut(s)	165, 333
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	10, 27, 181
Bsp19I	CCATGG	1 cut(s)	110
BspANI	GGCC	2 cut(s)	165, 333
BspEI	TCCGGA	1 cut(s)	184
BspPI	GGATC	2 cut(s)	22, 176
BspQI	GCTCTTC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	10, 27, 181
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	2 cut(s)	45, 284
BstAFI	CTTAAG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	110
BstKTI	GATC	3 cut(s)	13, 30, 184
BstMBI	GATC	3 cut(s)	10, 27, 181
BstMCI	CGRYCG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	165, 333
BtgI	CCRYGG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	2 cut(s)	20, 111
CviJI	RGCY	9 cut(s)	43, 55, 61, 75, 95, 165, 300, 333, 356
CviKI_1	RGCY	9 cut(s)	43, 55, 61, 75, 95, 165, 300, 333, 356
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	3 cut(s)	12, 29, 183
DpnII	GATC	3 cut(s)	10, 27, 181
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	45, 284
EarI	CTCTTC	2 cut(s)	45, 284
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	110
Eco52I	CGGCCG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	23, 114
FaiI	YATR	9 cut(s)	15, 21, 112, 144, 156, 174, 216, 254, 338
FatI	CATG	2 cut(s)	19, 110
FbaI	TGATCA	1 cut(s)	10
FspBI	CTAG	1 cut(s)	125
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	165, 333
HapII	CCGG	3 cut(s)	162, 166, 185
Hin1II	CATG	2 cut(s)	23, 114
HinfI	GANTC	2 cut(s)	106, 321
HpaII	CCGG	3 cut(s)	162, 166, 185
HphI	GGTGA	2 cut(s)	151, 251
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	2 cut(s)	185, 295
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	392
Hsp92II	CATG	2 cut(s)	23, 114
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 27, 181
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	61, 85, 175, 179, 192, 198, 296, 310
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	125
MalI	GATC	3 cut(s)	12, 29, 183
MboI	GATC	3 cut(s)	10, 27, 181
MboII	GAAGA	3 cut(s)	62, 127, 271
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	5 cut(s)	40, 72, 85, 121, 183
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	3 cut(s)	162, 166, 185
MspR9I	CCNGG	1 cut(s)	167
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	3 cut(s)	10, 27, 181
NlaIII	CATG	2 cut(s)	23, 114
NmeAIII	GCCGAG	2 cut(s)	49, 244
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	106, 321
PspFI	CCCAGC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	10, 27, 181
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	6 cut(s)	45, 57, 63, 77, 83, 302
SfaNI	GCATC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	44, 56
SmoI	CTYRAG	2 cut(s)	44, 56
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	230
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	263, 294, 386
TasI	AATT	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	106, 321
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	71
TspRI	CASTG	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	56
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.