Rmu_sc0000358.1_g000007

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000358.1
OG0000641
Physical Location & Seq
Forward (+)
52255 .. 58603
6349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000358.1_g000007.1.cds

Sequence Viewer

Length: 891 bp
atggatcggtaccagagagtggagaagccaagagcaaagacgccaattgatgagaatgagattaggattacgagccatgggaggatgcgaaactacatcacttacgccatgactctgcttcaggctgaagtaaatttccttggtgaccttgtccatccaaacttggtaaaacttattggatactgcattgaggatgatcaaaggctgctagtgtatgagttcatgcctcaagggagcttggagaaccacctatttaggaggtccctgcctcttccatggtgtattagaatgaaaattgcattgggtgcagcaataggtcttgcttttcttcatgaggaggcagaaagccctgtgatttatcgtgactttaaaacctccaacatcttattggatgcagattacaatgccaaactttctgattttggacttgccaaagatggcccggagggtgataaaactcatgtctccacacgtgtgatgggaacttatggttatgcagctccagaatatgtaatgactgtaaccaccgtagctcacctccaccaccaccacactcacaggtcttcggcgagtagaaaccagctttcacgtcaaccggtgacgtctgcaagtgacccgcgcaccgacgccaacgccctagctttcttccccgtcttcttccattcccacctcctactgcggccattgatcataagtacgccgagccccatttcaaggagcttgaggaagagcttaggctacagtgtaccaccatggaagacaatccccgaggaatgtgtaaagtatgtgaaggactacttcaccggctgggattatggtattgatttggagagggtttctaacgatgctggggtttataccaagagtgttgaattgagtggtatagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

296

Amino Acids

33.58

Weight (kDa)

7.23

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 605
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 19
AccII CGCG 1 cut(s) 619
AciI CCGC 2 cut(s) 617, 679
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 104, 147
AcvI CACGTG 1 cut(s) 473
AcyI GRCGYC 3 cut(s) 41, 602, 627
AfaI GTAC 3 cut(s) 11, 697, 747
AfiI CCNNNNNNNGG 2 cut(s) 19, 714
AflIII ACRYGT 2 cut(s) 470, 472
AgeI ACCGGT 1 cut(s) 595
AgsI TTSAA 2 cut(s) 714, 872
AjiI CACGTC 1 cut(s) 590
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 7 cut(s) 237, 500, 533, 583, 641, 720, 732
AluI AGCT 7 cut(s) 237, 500, 533, 583, 641, 720, 732
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 2 cut(s) 439, 680
ApeKI GCWGC 3 cut(s) 205, 308, 497
ApoI RAATTY 1 cut(s) 133
AsiGI ACCGGT 1 cut(s) 595
Asp718I GGTACC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 2 cut(s) 261, 440
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 5 cut(s) 155, 461, 527, 610, 793
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 707
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 3 cut(s) 555, 646, 764
BbvI GCAGC 3 cut(s) 192, 320, 509
BccI CCATC 3 cut(s) 162, 431, 472
BciVI GTATCC 1 cut(s) 173
BclI TGATCA 2 cut(s) 196, 687
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 2 cut(s) 209, 638
BfmI CTRYAG 1 cut(s) 739
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 4 cut(s) 206, 309, 498, 680
BlsI GCNGC 4 cut(s) 207, 310, 499, 681
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 767
BmgBI CACGTC 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 261, 440
BmiI GGNNCC 2 cut(s) 11, 263
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 3 cut(s) 75, 382, 835
BpiI GAAGAC 3 cut(s) 555, 646, 764
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 733
BpuEI CTTGAG 2 cut(s) 213, 742
BpuMI CCSGG 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 473
BsaHI GRCGYC 3 cut(s) 41, 602, 627
BsaJI CCNNGG 5 cut(s) 76, 139, 275, 752, 768
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 714
Bse118I RCCGGY 2 cut(s) 595, 803
BseDI CCNNGG 5 cut(s) 76, 139, 275, 752, 768
BseGI GGATG 4 cut(s) 90, 154, 199, 397
BseLI CCNNNNNNNGG 2 cut(s) 19, 714
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 3 cut(s) 192, 320, 509
BseYI CCCAGC 2 cut(s) 807, 848
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 619
BshFI GGCC 2 cut(s) 441, 682
BshNI GGYRCC 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 3 cut(s) 443, 596, 804
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 19, 714
BsmAI GTCTC 1 cut(s) 469
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 441, 682
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 3 cut(s) 4, 196, 687
Bsp19I CCATGG 3 cut(s) 76, 275, 752
BspACI CCGC 2 cut(s) 617, 679
BspANI GGCC 2 cut(s) 441, 682
BspFNI CGCG 1 cut(s) 619
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 11, 263
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 722
BspT107I GGYRCC 1 cut(s) 9
BsrFI RCCGGY 2 cut(s) 595, 803
BssAI RCCGGY 2 cut(s) 595, 803
BssECI CCNNGG 5 cut(s) 76, 139, 275, 752, 768
BssMI GATC 3 cut(s) 4, 196, 687
BssNI GRCGYC 3 cut(s) 41, 602, 627
BssT1I CCWWGG 4 cut(s) 76, 139, 275, 752
Bst4CI ACNGT 3 cut(s) 520, 529, 743
Bst6I CTCTTC 2 cut(s) 276, 722
BstACI GRCGYC 3 cut(s) 41, 602, 627
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 733
BstDSI CCRYGG 3 cut(s) 76, 275, 752
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 4 cut(s) 90, 154, 199, 397
BstFNI CGCG 1 cut(s) 619
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 3 cut(s) 7, 199, 690
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 3 cut(s) 4, 196, 687
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 739
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 192, 320, 509
BstV2I GAAGAC 3 cut(s) 555, 646, 764
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 441, 682
BtgI CCRYGG 3 cut(s) 76, 275, 752
BtrI CACGTC 1 cut(s) 590
BtsCI GGATG 4 cut(s) 90, 154, 199, 397
BtsIMutI CAGTG 1 cut(s) 748
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 621
Cfr10I RCCGGY 2 cut(s) 595, 803
Cfr13I GGNCC 2 cut(s) 261, 440
CseI GACGC 2 cut(s) 49, 635
Csp6I GTAC 3 cut(s) 10, 696, 746
CspAI ACCGGT 1 cut(s) 595
CviAII CATG 7 cut(s) 77, 109, 223, 276, 332, 461, 753
CviQI GTAC 3 cut(s) 10, 696, 746
DdeI CTNAG 1 cut(s) 733
DpnI GATC 3 cut(s) 6, 198, 689
DpnII GATC 3 cut(s) 4, 196, 687
DraI TTTAAA 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 276, 722
EarI CTCTTC 2 cut(s) 276, 722
Eco130I CCWWGG 4 cut(s) 76, 139, 275, 752
Eco24I GRGCYC 1 cut(s) 707
Eco47I GGWCC 1 cut(s) 261
Eco57I CTGAAG 2 cut(s) 104, 147
Eco72I CACGTG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 143
EcoT14I CCWWGG 4 cut(s) 76, 139, 275, 752
EcoT38I GRGCYC 1 cut(s) 707
ErhI CCWWGG 4 cut(s) 76, 139, 275, 752
FaeI CATG 7 cut(s) 80, 112, 226, 279, 335, 464, 756
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 1 cut(s) 247
FatI CATG 7 cut(s) 76, 108, 222, 275, 331, 460, 752
FauI CCCGC 1 cut(s) 624
FbaI TGATCA 2 cut(s) 196, 687
Fnu4HI GCNGC 4 cut(s) 206, 309, 498, 680
FokI GGATG 4 cut(s) 97, 141, 206, 404
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 4 cut(s) 206, 309, 498, 680
FspBI CTAG 2 cut(s) 209, 638
GlaI GCGC 1 cut(s) 620
GluI GCNGC 4 cut(s) 206, 309, 498, 680
GsaI CCCAGC 2 cut(s) 811, 852
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 2 cut(s) 441, 682
HapII CCGG 3 cut(s) 443, 596, 804
HgaI GACGC 2 cut(s) 49, 635
HhaI GCGC 1 cut(s) 621
Hin1I GRCGYC 3 cut(s) 41, 602, 627
Hin1II CATG 7 cut(s) 80, 112, 226, 279, 335, 464, 756
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HincII GTYRAC 1 cut(s) 593
HindII GTYRAC 1 cut(s) 593
HinfI GANTC 1 cut(s) 112
HpaII CCGG 3 cut(s) 443, 596, 804
HphI GGTGA 5 cut(s) 155, 461, 527, 610, 793
Hpy166II GTNNAC 2 cut(s) 593, 746
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 3 cut(s) 332, 362, 503
Hpy8I GTNNAC 2 cut(s) 593, 746
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 1 cut(s) 784
HpyCH4III ACNGT 3 cut(s) 520, 529, 743
HpyCH4IV ACGT 3 cut(s) 472, 589, 602
HpyCH4V TGCA 6 cut(s) 186, 299, 308, 395, 497, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 733
HpySE526I ACGT 3 cut(s) 472, 589, 602
Hsp92I GRCGYC 3 cut(s) 41, 602, 627
Hsp92II CATG 7 cut(s) 80, 112, 226, 279, 335, 464, 756
HspAI GCGC 1 cut(s) 619
KpnI GGTACC 1 cut(s) 13
Ksp22I TGATCA 2 cut(s) 196, 687
Kzo9I GATC 3 cut(s) 4, 196, 687
LguI GCTCTTC 1 cut(s) 722
LmnI GCTCC 3 cut(s) 234, 505, 717
Lsp1109I GCAGC 3 cut(s) 192, 320, 509
LweI GCATC 3 cut(s) 75, 382, 835
MaeI CTAG 2 cut(s) 209, 638
MaeII ACGT 3 cut(s) 472, 589, 602
MaeIII GTNAC 5 cut(s) 143, 362, 520, 598, 611
MalI GATC 3 cut(s) 6, 198, 689
MboI GATC 3 cut(s) 4, 196, 687
MboII GAAGA 8 cut(s) 263, 320, 555, 637, 646, 649, 739, 769
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 4 cut(s) 45, 133, 294, 872
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 402
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 473
MspI CCGG 3 cut(s) 443, 596, 804
MspR9I CCNGG 1 cut(s) 443
MunI CAATTG 1 cut(s) 45
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 3 cut(s) 76, 275, 752
NdeII GATC 3 cut(s) 4, 196, 687
NlaIII CATG 7 cut(s) 80, 112, 226, 279, 335, 464, 756
NlaIV GGNNCC 2 cut(s) 11, 263
NmeAIII GCCGAG 1 cut(s) 726
NmuCI GTSAC 4 cut(s) 143, 362, 598, 611
OliI CACNNNNGTG 1 cut(s) 473
PagI TCATGA 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 722
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 595
PkrI GCNGC 4 cut(s) 207, 310, 499, 681
PleI GAGTC 1 cut(s) 106
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
PspCI CACGTG 1 cut(s) 473
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 2 cut(s) 807, 848
PspN4I GGNNCC 2 cut(s) 11, 263
PspPI GGNCC 2 cut(s) 261, 440
PspPPI RGGWCCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 3 cut(s) 11, 697, 747
RsaNI GTAC 3 cut(s) 10, 696, 746
RseI CAYNNNNRTG 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 206, 309, 498, 680
Sau3AI GATC 3 cut(s) 4, 196, 687
Sau96I GGNCC 2 cut(s) 261, 440
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 3 cut(s) 75, 382, 835
SfcI CTRYAG 1 cut(s) 739
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 228, 721
SmoI CTYRAG 2 cut(s) 228, 721
Sse9I AATT 4 cut(s) 45, 133, 294, 872
SsiI CCGC 2 cut(s) 617, 679
SspMI CTAG 2 cut(s) 209, 638
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 4 cut(s) 76, 139, 275, 752
TaaI ACNGT 3 cut(s) 520, 529, 743
TaiI ACGT 3 cut(s) 475, 592, 605
TasI AATT 4 cut(s) 45, 133, 294, 872
TauI GCSGC 1 cut(s) 682
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 4 cut(s) 143, 362, 598, 611
TseI GCWGC 3 cut(s) 205, 308, 497
Tsp45I GTSAC 4 cut(s) 143, 362, 598, 611
TspDTI ATGAA 3 cut(s) 211, 305, 320
TspRI CASTG 1 cut(s) 748
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 475
XspI CTAG 2 cut(s) 209, 638
ZraI GACGTC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.