Rorug02G0535800

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000641
Physical Location & Seq
Reverse (-)
66467121 .. 66468505
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0535800.1

Sequence Viewer

Length: 483 bp
ATGGTTAAAATAGGAGGCATCTTTGTCTGTCTCTTGATTGTGGCCATGGACATCGGAGCTGGGATTCTCGGCATCGAAGCGGAACTTGAACAAAACAAGGTGAAACAATTAAGGTTATGGATCTTTGAGTGTAGAGAGCCAAGCCATCCGGCATTCAAGCTAGGGTTAGGTGCAGCAGCACTTCTGGTTCTTGCTCATGTCATTGCTAACTTGCTTGGTGGATGCAACAATTGCATTTGCTCTCAAGAAGAGCTCCAAAAGGCTCCTCCTAATAGACAACTCTCACTCGCATGCCTCGTCTTCACCTGGGTCATTCTAGCCGTTGGATTGTCGATGCTGGTGATAGGGACTTGGTCGAACCACAAGTCAAGAGCTTCATGTGGTTTCACACACCATCATTTTCTTTCCATCGGAGGCATCTTGTGCTTTGTTCATGGCCTGTTTTGTGTGGCATATTACATTACTACCACTTCGACCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

160

Amino Acids

17.32

Weight (kDa)

7.6

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 58 - 146 2.1e-22 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 42
AgsI TTSAA 2 cut(s) 89, 157
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 4 cut(s) 59, 160, 253, 374
AluI AGCT 4 cut(s) 59, 160, 253, 374
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 42, 436
ApeKI GCWGC 2 cut(s) 173, 176
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AsuHPI GGTGA 3 cut(s) 112, 295, 352
BalI TGGCCA 1 cut(s) 44
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 185, 188
BccI CCATC 3 cut(s) 153, 402, 416
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 161, 317
BisI GCNGC 2 cut(s) 174, 177
BlsI GCNGC 2 cut(s) 175, 178
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 5 cut(s) 27, 81, 212, 324, 426
BpiI GAAGAC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 45, 306
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 45, 306
BseGI GGATG 2 cut(s) 145, 227
BseMI GCAATG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 185, 188
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 44, 438
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 2 cut(s) 44, 438
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 120
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 80
BspANI GGCC 2 cut(s) 44, 438
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 45, 306
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 243
BstAPI GCANNNNNTGC 2 cut(s) 231, 423
BstC8I GCNNGC 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 145, 227
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 120
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 2 cut(s) 231, 423
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 185, 188
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 2 cut(s) 44, 438
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 145, 227
Cac8I GCNNGC 1 cut(s) 292
CviAII CATG 5 cut(s) 46, 197, 291, 378, 434
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 49, 200, 294, 381, 437
FaiI YATR 7 cut(s) 47, 118, 198, 292, 379, 435, 454
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 361
FatI CATG 5 cut(s) 45, 196, 290, 377, 433
Fnu4HI GCNGC 2 cut(s) 174, 177
FokI GGATG 2 cut(s) 132, 234
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 174, 177
FspBI CTAG 2 cut(s) 161, 317
GluI GCNGC 2 cut(s) 174, 177
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 44, 438
HapII CCGG 1 cut(s) 149
Hin1II CATG 5 cut(s) 49, 200, 294, 381, 437
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 149
HphI GGTGA 3 cut(s) 112, 295, 352
Hpy188I TCNGA 2 cut(s) 56, 413
Hpy188III TCNNGA 3 cut(s) 34, 245, 369
HpyCH4V TGCA 3 cut(s) 173, 225, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 423
Hsp92II CATG 5 cut(s) 49, 200, 294, 381, 437
Kzo9I GATC 1 cut(s) 120
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 56, 258, 268
LpnPI CCDG 7 cut(s) 45, 162, 170, 292, 319, 323, 452
Lsp1109I GCAGC 2 cut(s) 185, 188
LweI GCATC 5 cut(s) 27, 81, 212, 324, 426
MaeI CTAG 2 cut(s) 161, 317
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 260, 292
MfeI CAATTG 1 cut(s) 229
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 2 cut(s) 107, 229
MluNI TGGCCA 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 4 cut(s) 8, 276, 305, 407
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 6, 110
MslI CAYNNNNRTG 1 cut(s) 289
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 307
MunI CAATTG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 231, 423
NcoI CCATGG 1 cut(s) 45
NdeII GATC 1 cut(s) 120
NlaIII CATG 5 cut(s) 49, 200, 294, 381, 437
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 48
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 175, 178
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 289
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 6, 110
SatI GCNGC 2 cut(s) 174, 177
Sau3AI GATC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 255
SetI ASST 8 cut(s) 61, 102, 116, 162, 172, 255, 308, 376
SfaNI GCATC 5 cut(s) 27, 81, 212, 324, 426
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SphI GCATGC 1 cut(s) 294
Sse9I AATT 2 cut(s) 107, 229
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 161, 317
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 4 cut(s) 75, 332, 356, 473
TasI AATT 2 cut(s) 107, 229
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 6, 110
Tru9I TTAA 2 cut(s) 6, 110
TseI GCWGC 2 cut(s) 173, 176
TspDTI ATGAA 2 cut(s) 366, 422
Tth111I GACNNNGTC 1 cut(s) 352
XceI RCATGY 1 cut(s) 294
XspI CTAG 2 cut(s) 161, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.