Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000641

Physical Location & Seq

Genomic Coordinates Reverse (-)

56737527 .. 56738735

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0478300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTGATATGCAAATCGTTCTGGCTTTAAAAACTAGTGTGGAAGCGCAGTATGTGGAAATGATGGTTCCTCTTTATTCTCCTGGGTGCGAGAAGAAAGTCAAGAAGGCCCTATCCCACCTCAAAGGAATATACTCGGTGAACGTAGACTGCAGCCAACAAAAGGTGACGGTTTGGGGAATATGCAACAAATACGATGTGCTAGCCACAATAAGGACCAAGAGAAAACACGCTTGCTTTTGGAATCCTGAAGACAACGATATTGAAGAGGACGGAGAGGAAGAAGCAGAGGTACCACCGACCGTGACGATGTCGGAGTCAGACGACTCAACACCACCGATTGCAAAAAGAAAGTACTTATTAAGACAGCCTTCTTTAAAGGCTCTCACCAGGGTTCGCTCTTTGAGCTTGAGAGCATGGATGAAGGTCTTCACCAGGTCCCATTCATTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

8.64

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	24 - 60	6.2e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01300 AT3G28690 AT3G28690 AT3G28690 AT5G15080
fragaria_vesca	FvH4_1g02650 FvH4_4g31950 FvH4_4g31950 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49270
malus_domestica	MD09G1046600.v1.1 MD09G1048900.v1.1 MD13G1078900.v1.1 MD15G1168500.v1.1 MD16G1078600.v1.1 MD17G1047100.v1.1 MD17G1048900.v1.1
prunus_persica	Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.3G270000_v2.0.a1 Prupe.3G272000_v2.0.a1 Prupe.7G248000_v2.0.a1
pyrus_communis	pycom111g03700 pycom111g03970 pycom111g03980 pycom13g06850 pycom15g15030 pycom16g06800 pycom17g04200 pycom17g04390
rosa_chinensis	RchiOBHm_Chr2g0087681 RchiOBHm_Chr2g0104451 RchiOBHm_Chr2g0168861 RchiOBHm_Chr2g0169151 RchiOBHm_Chr4g0440601
rosa_laevigata	RLG00000004259 RLG00000015892 RLG00000019191 RLG00000037088
rosa_multiflora	Rmu_sc0000358.1_g000007 Rmu_sc0008018.1_g000004 Rmu_ssc0000393.1_g000008
rosa_roxburghii	Rroxscaffold_1G00021930 Rroxscaffold_2G00082390 Rroxscaffold_2G00082620 Rroxscaffold_2G00153290 Rroxscaffold_5G00381430
rosa_rugosa	Rorug01G0478300 Rorug02G0535700 Rorug02G0535800 Rorug02G0537600 Rorug04G0327000
rosa_samantha	Rh2AG032300 Rh2AG606800 Rh2AG609200 Rh2BG031400 Rh2BG619600 Rh2BG622200 Rh2CG031800 Rh2CG588200 Rh2CG590900 Rh2DG031700 Rh2DG630200 Rh2DG632800 Rh4AG378900 Rh4CG406200 Rh4DG385400 Rh6CG197400
rosa_wichuraiana	Rw2G002520 Rw2G050310 Rw2G050530 Rw4G032540 Rw4G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	294, 356
AfiI	CCNNNNNNNGG	2 cut(s)	163, 213
AgsI	TTSAA	1 cut(s)	266
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	3 cut(s)	82, 389, 434
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	109, 216, 438
AsuHPI	GGTGA	4 cut(s)	151, 178, 379, 424
AsuNHI	GCTAGC	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	216, 438
BanI	GGYRCC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BbsI	GAAGAC	2 cut(s)	258, 421
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	3 cut(s)	84, 391, 436
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	36, 203
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	84, 391, 436
Bme18I	GGWCC	2 cut(s)	216, 438
BmgT120I	GGNCC	3 cut(s)	109, 216, 438
BmiI	GGNNCC	3 cut(s)	69, 294, 440
BmrFI	CCNGG	3 cut(s)	84, 391, 436
BmtI	GCTAGC	1 cut(s)	206
BpiI	GAAGAC	2 cut(s)	258, 421
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	83, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 213
BseBI	CCWGG	3 cut(s)	84, 391, 436
BseDI	CCNNGG	2 cut(s)	83, 390
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	163, 213
BseXI	GCAGC	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	163, 213
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	69, 294, 440
BspMAI	CTGCAG	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	83, 390
Bst2UI	CCWGG	3 cut(s)	84, 391, 436
Bst4CI	ACNGT	2 cut(s)	172, 304
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	204, 235
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	3 cut(s)	84, 391, 436
BstSCI	CCNGG	3 cut(s)	82, 389, 434
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	2 cut(s)	258, 421
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	204, 235
CciI	TCATGA	1 cut(s)	452
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	109, 216, 438
CsiI	ACCWGGT	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	293, 355
CviAII	CATG	2 cut(s)	417, 453
CviJI	RGCY	8 cut(s)	5, 26, 110, 156, 206, 370, 383, 408
CviKI_1	RGCY	8 cut(s)	5, 26, 110, 156, 206, 370, 383, 408
CviQI	GTAC	2 cut(s)	293, 355
DraI	TTTAAA	2 cut(s)	30, 378
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	216, 438
Eco57I	CTGAAG	1 cut(s)	270
EcoO109I	RGGNCCY	2 cut(s)	109, 438
EcoRII	CCWGG	3 cut(s)	82, 389, 434
FaeI	CATG	2 cut(s)	420, 456
FaiI	YATR	6 cut(s)	11, 54, 133, 184, 418, 454
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	416, 452
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	2 cut(s)	36, 203
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	420, 456
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	3 cut(s)	244, 317, 326
HphI	GGTGA	4 cut(s)	151, 178, 379, 424
Hpy166II	GTNNAC	2 cut(s)	142, 148
Hpy188I	TCNGA	2 cut(s)	316, 322
Hpy188III	TCNNGA	3 cut(s)	103, 248, 453
Hpy8I	GTNNAC	2 cut(s)	142, 148
HpyAV	CCTTC	3 cut(s)	100, 381, 418
HpyCH4III	ACNGT	2 cut(s)	172, 304
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	13, 153, 186, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	420, 456
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	8, 69, 96, 261, 376, 403, 421, 448
Lsp1109I	GCAGC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	434
MaeI	CTAG	2 cut(s)	36, 203
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	166, 304
MboII	GAAGA	5 cut(s)	106, 263, 278, 293, 421
MlyI	GAGTC	2 cut(s)	320, 326
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	81, 131, 262, 271, 283
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	3 cut(s)	29, 362, 377
MslI	CAYNNNNRTG	1 cut(s)	451
MspR9I	CCNGG	3 cut(s)	84, 391, 436
MvaI	CCWGG	3 cut(s)	84, 391, 436
MwoI	GCNNNNNNNGC	1 cut(s)	405
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	420, 456
NlaIV	GGNNCC	3 cut(s)	69, 294, 440
NmuCI	GTSAC	2 cut(s)	166, 304
PagI	TCATGA	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	2 cut(s)	320, 325
PpsI	GAGTC	2 cut(s)	320, 325
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	3 cut(s)	82, 389, 434
PspGI	CCWGG	3 cut(s)	82, 389, 434
PspN4I	GGNNCC	3 cut(s)	69, 294, 440
PspPI	GGNCC	3 cut(s)	109, 216, 438
PspPPI	RGGWCCY	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	155
PsyI	GACNNNGTC	1 cut(s)	310
RsaI	GTAC	2 cut(s)	294, 356
RsaNI	GTAC	2 cut(s)	293, 355
RseI	CAYNNNNRTG	1 cut(s)	451
SaqAI	TTAA	3 cut(s)	29, 362, 377
SatI	GCNGC	1 cut(s)	154
Sau96I	GGNCC	3 cut(s)	109, 216, 438
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	2 cut(s)	320, 326
ScrFI	CCNGG	3 cut(s)	84, 391, 436
SetI	ASST	7 cut(s)	123, 147, 168, 294, 410, 429, 440
SexAI	ACCWGGT	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	216, 438
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SpeI	ACTAGT	1 cut(s)	35
SspMI	CTAG	2 cut(s)	36, 203
StyD4I	CCNGG	3 cut(s)	82, 389, 434
TaaI	ACNGT	2 cut(s)	172, 304
TaiI	ACGT	1 cut(s)	147
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	3 cut(s)	29, 362, 377
Tru9I	TTAA	3 cut(s)	29, 362, 377
TseFI	GTSAC	2 cut(s)	166, 304
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	2 cut(s)	166, 304
TspDTI	ATGAA	2 cut(s)	435, 437
TspGWI	ACGGA	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	216, 438
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	2 cut(s)	36, 203
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.