Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000641

Physical Location & Seq

Genomic Coordinates Reverse (-)

2983475 .. 2984336

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCGGTGTGTTACTGAGTTCAGGTTCGAATGTCCTTGTTTTTACCTGATACCTATTCTTCTAATCAATGATTTATTCTCCCAGGACTACACTGCCAAGCTTTCTGATTTTGGGCTCGCCAAAGATGCTCCAGAGGGAGACAAAACTCACGTCTCCACCCGAGTTATGGGCACTTACGGTTATGCAGCCCCTGAGTATGTAATGACAGGACACCTCACTTCAAAAAGTGATGTGTATAGCTTCGGGGTGGTTCTGCTTGAAATGTTGGTTGGTAAAAGATCTATGGACAAAAACCGACCCAAAGGGGAGCATAACTTGGTTGAGTGGGCACACCCGCATCTGAGAGACAGGCGAAGGTTCTATCGTCTAGTAGATCCTCGAATTGAAGGCCGCTTCTCTATCAAAGGTGCTCAGAAGGCATTTCATTTGGCTGCCCGTTGCCTTAGCCGTGACCCCAAGGCTAGACCTCTGATGAGCGAAGTTGTTGAAGTGCTGAAGCCTCTTCCCGATCTCAAAGACATGGCCTGCTCCTCATCTTACTACCAAGCCTTACAAGCTCCTGGGTCCAATCCAATTTCTCGAAGTGGCAGTAGAGGGCTGGCCGGGGTTTCAAGGAATGGACAACCAACTAGAACCCGATCCATGCCAAATGGTCCGCATGCCTCACCCTATCACCTAAACCAAATTAATCGATCACCCAGACCTATTGCGCAATCTGCACAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

27.14

Weight (kDa)

9.65

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 163	1.9e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 165	5.7e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01300 AT3G28690 AT3G28690 AT3G28690 AT5G15080
fragaria_vesca	FvH4_1g02650 FvH4_4g31950 FvH4_4g31950 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49010 FvH4_6g49270
malus_domestica	MD09G1046600.v1.1 MD09G1048900.v1.1 MD13G1078900.v1.1 MD15G1168500.v1.1 MD16G1078600.v1.1 MD17G1047100.v1.1 MD17G1048900.v1.1
prunus_persica	Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.1G267900_v2.0.a1 Prupe.3G270000_v2.0.a1 Prupe.3G272000_v2.0.a1 Prupe.7G248000_v2.0.a1
pyrus_communis	pycom111g03700 pycom111g03970 pycom111g03980 pycom13g06850 pycom15g15030 pycom16g06800 pycom17g04200 pycom17g04390
rosa_chinensis	RchiOBHm_Chr2g0087681 RchiOBHm_Chr2g0104451 RchiOBHm_Chr2g0168861 RchiOBHm_Chr2g0169151 RchiOBHm_Chr4g0440601
rosa_laevigata	RLG00000004259 RLG00000015892 RLG00000019191 RLG00000037088
rosa_multiflora	Rmu_sc0000358.1_g000007 Rmu_sc0008018.1_g000004 Rmu_ssc0000393.1_g000008
rosa_roxburghii	Rroxscaffold_1G00021930 Rroxscaffold_2G00082390 Rroxscaffold_2G00082620 Rroxscaffold_2G00153290 Rroxscaffold_5G00381430
rosa_rugosa	Rorug01G0478300 Rorug02G0535700 Rorug02G0535800 Rorug02G0537600 Rorug04G0327000
rosa_samantha	Rh2AG032300 Rh2AG606800 Rh2AG609200 Rh2BG031400 Rh2BG619600 Rh2BG622200 Rh2CG031800 Rh2CG588200 Rh2CG590900 Rh2DG031700 Rh2DG630200 Rh2DG632800 Rh4AG378900 Rh4CG406200 Rh4DG385400 Rh6CG197400
rosa_wichuraiana	Rw2G002520 Rw2G050310 Rw2G050530 Rw4G032540 Rw4G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	711
AciI	CCGC	4 cut(s)	4, 335, 391, 656
AclWI	GGATC	2 cut(s)	368, 633
AcoI	YGGCCR	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	222, 260, 386, 488, 612
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	81, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	3 cut(s)	100, 240, 557
AluI	AGCT	3 cut(s)	100, 240, 557
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	3 cut(s)	132, 157, 339
AlwI	GGATC	2 cut(s)	368, 633
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	3 cut(s)	388, 522, 600
ApeKI	GCWGC	2 cut(s)	185, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AseI	ATTAAT	1 cut(s)	687
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	564, 653
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	3 cut(s)	657, 665, 687
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	564, 653
BaeGI	GKGCMC	2 cut(s)	173, 331
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	197, 418
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	83, 561
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	132, 157, 339
BfaI	CTAG	3 cut(s)	368, 462, 630
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	3 cut(s)	186, 391, 432
BlsI	GCNGC	3 cut(s)	187, 392, 433
Bme1390I	CCNGG	3 cut(s)	83, 561, 604
Bme18I	GGWCC	2 cut(s)	564, 653
BmeT110I	CYCGRG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	564, 653
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	3 cut(s)	83, 561, 604
BmsI	GCATC	2 cut(s)	115, 346
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	604
Bsa29I	ATCGAT	1 cut(s)	691
BsaJI	CCNNGG	4 cut(s)	81, 456, 560, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	83, 561
BseCI	ATCGAT	1 cut(s)	691
BseDI	CCNNGG	4 cut(s)	81, 456, 560, 603
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	6, 183, 332, 425
BseRI	GAGGAG	1 cut(s)	520
BseSI	GKGCMC	2 cut(s)	173, 331
BseXI	GCAGC	2 cut(s)	197, 418
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	3 cut(s)	390, 524, 602
BshVI	ATCGAT	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	3 cut(s)	132, 157, 339
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	390, 524, 602
BsoBI	CYCGRG	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	4 cut(s)	117, 173, 331, 412
Bsp143I	GATC	5 cut(s)	278, 373, 508, 638, 692
BspACI	CCGC	4 cut(s)	4, 335, 391, 656
BspANI	GGCC	3 cut(s)	390, 524, 602
BspCNI	CTCAG	4 cut(s)	7, 184, 333, 424
BspDI	ATCGAT	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	565
BspPI	GGATC	2 cut(s)	368, 633
BspT104I	TTCGAA	1 cut(s)	27
BssECI	CCNNGG	4 cut(s)	81, 456, 560, 603
BssMI	GATC	5 cut(s)	278, 373, 508, 638, 692
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	83, 561
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	4 cut(s)	117, 526, 600, 660
BstDEI	CTNAG	5 cut(s)	15, 192, 341, 411, 443
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	5 cut(s)	281, 376, 511, 641, 695
BstMAI	GTCTC	3 cut(s)	132, 157, 339
BstMBI	GATC	5 cut(s)	278, 373, 508, 638, 692
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 416, 554, 716
BstNI	CCWGG	2 cut(s)	83, 561
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	3 cut(s)	81, 559, 602
BstSLI	GKGCMC	2 cut(s)	173, 331
BstV1I	GCAGC	2 cut(s)	197, 418
BstX2I	RGATCY	2 cut(s)	278, 373
BstYI	RGATCY	2 cut(s)	278, 373
Bsu15I	ATCGAT	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	390, 524, 602
BsuTUI	ATCGAT	1 cut(s)	691
BtrI	CACGTC	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	4 cut(s)	117, 526, 600, 660
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	2 cut(s)	564, 653
ClaI	ATCGAT	1 cut(s)	691
CviAII	CATG	3 cut(s)	520, 643, 659
DdeI	CTNAG	5 cut(s)	15, 192, 341, 411, 443
DpnI	GATC	5 cut(s)	280, 375, 510, 640, 694
DpnII	GATC	5 cut(s)	278, 373, 508, 638, 692
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	564, 653
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	81, 559
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	523, 646, 662
FatI	CATG	3 cut(s)	519, 642, 658
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	186, 391, 432
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	186, 391, 432
FspBI	CTAG	3 cut(s)	368, 462, 630
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	3 cut(s)	186, 391, 432
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	390, 524, 602
HapII	CCGG	1 cut(s)	603
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	3 cut(s)	523, 646, 662
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HindIII	AAGCTT	1 cut(s)	98
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	3 cut(s)	657, 665, 687
Hpy188I	TCNGA	4 cut(s)	106, 342, 414, 471
Hpy188III	TCNNGA	3 cut(s)	131, 506, 579
HpyAV	CCTTC	3 cut(s)	348, 380, 409
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	185, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 416, 554, 716
HpyF3I	CTNAG	5 cut(s)	15, 192, 341, 411, 443
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	523, 646, 662
HspAI	GCGC	1 cut(s)	710
Kzo9I	GATC	5 cut(s)	278, 373, 508, 638, 692
LmnI	GCTCC	4 cut(s)	133, 307, 533, 562
Lsp1109I	GCAGC	2 cut(s)	197, 418
LweI	GCATC	2 cut(s)	115, 346
MaeI	CTAG	3 cut(s)	368, 462, 630
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	10, 449
MalI	GATC	5 cut(s)	280, 375, 510, 640, 694
MboI	GATC	5 cut(s)	278, 373, 508, 638, 692
MboII	GAAGA	2 cut(s)	50, 494
MflI	RGATCY	2 cut(s)	278, 373
MhlI	GDGCHC	4 cut(s)	117, 173, 331, 412
MluCI	AATT	3 cut(s)	381, 573, 684
MnlI	CCTC	8 cut(s)	127, 224, 387, 477, 510, 541, 587, 673
MseI	TTAA	1 cut(s)	687
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	3 cut(s)	83, 561, 604
MvaI	CCWGG	2 cut(s)	83, 561
MwoI	GCNNNNNNNGC	4 cut(s)	125, 416, 554, 716
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	5 cut(s)	278, 373, 508, 638, 692
NlaIII	CATG	3 cut(s)	523, 646, 662
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	711
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	187, 392, 433
PshBI	ATTAAT	1 cut(s)	687
Psp6I	CCWGG	2 cut(s)	81, 559
PspGI	CCWGG	2 cut(s)	81, 559
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	564, 653
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	278, 373
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	3 cut(s)	186, 391, 432
Sau3AI	GATC	5 cut(s)	278, 373, 508, 638, 692
Sau96I	GGNCC	2 cut(s)	564, 653
ScrFI	CCNGG	3 cut(s)	83, 561, 604
SduI	GDGCHC	4 cut(s)	117, 173, 331, 412
SfaNI	GCATC	2 cut(s)	115, 346
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	2 cut(s)	564, 653
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	3 cut(s)	381, 573, 684
SsiI	CCGC	4 cut(s)	4, 335, 391, 656
SspMI	CTAG	3 cut(s)	368, 462, 630
StyD4I	CCNGG	3 cut(s)	81, 559, 602
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	27, 379, 580, 691
TasI	AATT	3 cut(s)	381, 573, 684
TauI	GCSGC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	2 cut(s)	185, 431
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	564, 653
VspI	ATTAAT	1 cut(s)	687
XceI	RCATGY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	3 cut(s)	368, 462, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.