Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

545796 .. 549413

Gene Structure 3618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGATTCCTTTCATGGAAACCGTCGTGGGTTTTATGATAGTGATGTACATTTTTGAGACGTATTTGGATCTGAGGCAACTCACTGCTCTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAGAAATCACGAGCATACAGTCTTGACAAAAGCTATTTTCACTTTGTTCATGAGTTTGTAACTATACTTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGATGTCTGGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCATTCTTGGCTGGTGTTATGACATGGTCACAGATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAACAAACAATATGGATGTTCATTAGGGACATGATCAAAGGAACATTCCTCTCTGTCATACTAGGCCCACCCATTGTTGCTGCGATAATTTTCATAGTCCAGAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTTATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCAACAAGTTCACTCCTCTTCCAGATGGAGACCTCCGGGAGAAGATTGAGAAACTTGCTTCTTCTCTAAAGTTTCCTTTGAAGAAGCTGTTTGTTGTCGATGGATCTACAAGGTCAAGCCATAGCAATGCTTACATGTATGGTTTCTTTAAGAACAAAAGGATTGTTCTTTATGATACGTTGATTCAGCAGTGCAAGAATGAGGATGAAATTGTGGCGGTTATTGCACACGAGCTTGGACATTGGAAACTGAATCACACTACATACTCGTTCATTGCAGTTCAAATCCTTGCCTTCTTACAATTTGGAGGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAGCCTGTTCTCATTGGTTTGATCATATTTCAGCACACTGTAATACCACTGCAACATCTAGTAAGCTTTGGCCTGAACCTCGTTAGTCGAGCGTTTGAGTTTCAGGCTGATGCTTTTGCTGTGAAGCTTGGCTATGCAAAAGATCTTCGTCCTGCTCTAGTGAAACTACAGGAAGAGAACTTATCAGCAATGAACACTGATCCATTGTACTCAGCTTATCACTACTCACATCCTCCTCTTGTTGAAAGGCTTCGAGCCATTGATGGAGAAGACAAGAAGACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

424

Amino Acids

48.48

Weight (kDa)

7.81

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	28 - 210	1.7e-64	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	214 - 418	7.7e-52	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	619
AciI	CCGC	2 cut(s)	617, 839
AclWI	GGATC	5 cut(s)	78, 251, 293, 733, 1181
AcuI	CTGAAG	1 cut(s)	949
AfaI	GTAC	3 cut(s)	50, 386, 1196
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	5 cut(s)	421, 625, 703, 905, 1232
AluBI	AGCT	8 cut(s)	97, 180, 275, 709, 856, 1053, 1114, 1202
AluI	AGCT	8 cut(s)	97, 180, 275, 709, 856, 1053, 1114, 1202
Alw26I	GTCTC	4 cut(s)	53, 411, 582, 645
AlwI	GGATC	5 cut(s)	78, 251, 293, 733, 1181
AoxI	GGCC	3 cut(s)	292, 487, 1057
ApeKI	GCWGC	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	1236
AspS9I	GGNCC	3 cut(s)	292, 488, 533
AsuC2I	CCSGG	2 cut(s)	602, 659
AvaII	GGWCC	1 cut(s)	533
BauI	CACGAG	2 cut(s)	156, 851
BbsI	GAAGAC	2 cut(s)	1263, 1271
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	554, 641, 716, 1244
BciVI	GTATCC	1 cut(s)	926
BclI	TGATCA	2 cut(s)	456, 1008
BcnI	CCSGG	2 cut(s)	602, 659
BcoDI	GTCTC	4 cut(s)	53, 411, 582, 645
BfaI	CTAG	4 cut(s)	485, 581, 1046, 1145
BfmI	CTRYAG	1 cut(s)	1154
BfuI	GTATCC	1 cut(s)	926
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	602, 659
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	3 cut(s)	292, 488, 533
BmrFI	CCNGG	2 cut(s)	602, 659
BmsI	GCATC	1 cut(s)	1087
BpiI	GAAGAC	2 cut(s)	1263, 1271
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	602, 659
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	3 cut(s)	117, 251, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	3 cut(s)	754, 894, 1182
BseDI	CCNNGG	3 cut(s)	117, 251, 284
BseGI	GGATG	3 cut(s)	444, 832, 1216
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	3 cut(s)	754, 894, 1182
BseMII	CTCAG	2 cut(s)	65, 1212
BseRI	GAGGAG	2 cut(s)	627, 1212
BseXI	GCAGC	1 cut(s)	490
BshFI	GGCC	3 cut(s)	294, 489, 1059
BsiSI	CCGG	2 cut(s)	602, 658
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	4 cut(s)	53, 411, 582, 645
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	294, 489, 1059
Bso31I	GGTCTC	1 cut(s)	645
Bsp1407I	TGTACA	1 cut(s)	48
BspACI	CCGC	2 cut(s)	617, 839
BspANI	GGCC	3 cut(s)	294, 489, 1059
BspCNI	CTCAG	2 cut(s)	66, 1211
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	5 cut(s)	78, 251, 293, 733, 1181
BspQI	GCTCTTC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	645
BsrBI	CCGCTC	1 cut(s)	619
BsrDI	GCAATG	3 cut(s)	754, 894, 1182
BsrGI	TGTACA	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	117, 251, 284
BssSI	CACGAG	2 cut(s)	156, 851
BssT1I	CCWWGG	2 cut(s)	117, 251
Bst2BI	CACGAG	2 cut(s)	156, 851
Bst4CI	ACNGT	3 cut(s)	25, 167, 1027
Bst6I	CTCTTC	4 cut(s)	626, 645, 968, 1155
BstAUI	TGTACA	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	74, 1198
BstF5I	GGATG	3 cut(s)	444, 832, 1216
BstMAI	GTCTC	4 cut(s)	53, 411, 582, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	600, 657
BstSFI	CTRYAG	1 cut(s)	1154
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	2 cut(s)	1263, 1271
BstX2I	RGATCY	4 cut(s)	70, 243, 725, 1129
BstYI	RGATCY	4 cut(s)	70, 243, 725, 1129
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	3 cut(s)	294, 489, 1059
BtsCI	GGATG	3 cut(s)	444, 832, 1216
BtsI	GCAGTG	3 cut(s)	84, 818, 1034
BtsIMutI	CAGTG	7 cut(s)	84, 363, 818, 954, 1023, 1034, 1182
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	292, 488, 533
Csp6I	GTAC	3 cut(s)	49, 385, 1195
CviAII	CATG	7 cut(s)	16, 197, 351, 413, 454, 565, 757
CviQI	GTAC	3 cut(s)	49, 385, 1195
DdeI	CTNAG	2 cut(s)	74, 1198
Eam1104I	CTCTTC	4 cut(s)	626, 645, 968, 1155
EarI	CTCTTC	4 cut(s)	626, 645, 968, 1155
Eco130I	CCWWGG	2 cut(s)	117, 251
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	949
EcoO109I	RGGNCCY	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	117, 251
ErhI	CCWWGG	2 cut(s)	117, 251
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	7 cut(s)	19, 200, 354, 416, 457, 568, 760
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	7 cut(s)	15, 196, 350, 412, 453, 564, 756
FbaI	TGATCA	2 cut(s)	456, 1008
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	3 cut(s)	451, 839, 1203
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	4 cut(s)	485, 581, 1046, 1145
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	294, 489, 1059
HapII	CCGG	2 cut(s)	602, 658
Hin1II	CATG	7 cut(s)	19, 200, 354, 416, 457, 568, 760
HindIII	AAGCTT	3 cut(s)	95, 1051, 1112
HinfI	GANTC	5 cut(s)	7, 221, 404, 805, 874
HpaII	CCGG	2 cut(s)	602, 658
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	3 cut(s)	75, 947, 977
Hpy8I	GTNNAC	1 cut(s)	633
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	925
HpyCH4III	ACNGT	3 cut(s)	25, 167, 1027
HpyCH4IV	ACGT	2 cut(s)	62, 800
HpyCH4V	TGCA	7 cut(s)	227, 319, 816, 848, 899, 1039, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	2 cut(s)	74, 1198
HpySE526I	ACGT	2 cut(s)	62, 800
Hsp92II	CATG	7 cut(s)	19, 200, 354, 416, 457, 568, 760
Ksp22I	TGATCA	2 cut(s)	456, 1008
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	4 cut(s)	485, 581, 1046, 1145
MaeII	ACGT	2 cut(s)	62, 800
MaeIII	GTNAC	2 cut(s)	205, 354
MbiI	CCGCTC	1 cut(s)	619
MflI	RGATCY	4 cut(s)	70, 243, 725, 1129
MluCI	AATT	5 cut(s)	129, 228, 510, 831, 923
MlyI	GAGTC	2 cut(s)	215, 413
MmeI	TCCRAC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	1236
MseI	TTAA	2 cut(s)	771, 1273
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	2 cut(s)	602, 658
MspR9I	CCNGG	2 cut(s)	602, 659
Mva1269I	GAATGC	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	845
NciI	CCSGG	2 cut(s)	602, 659
NlaIII	CATG	7 cut(s)	19, 200, 354, 416, 457, 568, 760
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	354
NspI	RCATGY	1 cut(s)	760
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	1236
PfeI	GAWTC	3 cut(s)	7, 805, 874
PflFI	GACNNNGTC	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	657
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	2 cut(s)	215, 412
PpsI	GAGTC	2 cut(s)	215, 412
PpuMI	RGGWCCY	1 cut(s)	533
PscI	ACATGT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	533
PspPI	GGNCC	3 cut(s)	292, 488, 533
PspPPI	RGGWCCY	1 cut(s)	533
PsuI	RGATCY	4 cut(s)	70, 243, 725, 1129
PsyI	GACNNNGTC	1 cut(s)	352
RsaI	GTAC	3 cut(s)	50, 386, 1196
RsaNI	GTAC	3 cut(s)	49, 385, 1195
RseI	CAYNNNNRTG	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	771, 1273
SatI	GCNGC	1 cut(s)	504
Sau96I	GGNCC	3 cut(s)	292, 488, 533
SchI	GAGTC	2 cut(s)	215, 413
ScrFI	CCNGG	2 cut(s)	602, 659
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	1 cut(s)	1154
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	5 cut(s)	129, 228, 510, 831, 923
SsiI	CCGC	2 cut(s)	617, 839
SspMI	CTAG	4 cut(s)	485, 581, 1046, 1145
StyD4I	CCNGG	2 cut(s)	600, 657
StyI	CCWWGG	2 cut(s)	117, 251
TaaI	ACNGT	3 cut(s)	25, 167, 1027
TaiI	ACGT	2 cut(s)	65, 803
TaqI	TCGA	4 cut(s)	402, 720, 1075, 1240
TasI	AATT	5 cut(s)	129, 228, 510, 831, 923
TatI	WGTACW	3 cut(s)	48, 384, 1194
TfiI	GAWTC	3 cut(s)	7, 805, 874
Tru1I	TTAA	2 cut(s)	771, 1273
Tru9I	TTAA	2 cut(s)	771, 1273
TscAI	CASTG	7 cut(s)	91, 370, 818, 961, 1030, 1041, 1189
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	354
TspRI	CASTG	7 cut(s)	91, 370, 818, 961, 1030, 1041, 1189
Tth111I	GACNNNGTC	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	533
XceI	RCATGY	1 cut(s)	760
XmnI	GAANNNNTTC	1 cut(s)	1236
XspI	CTAG	4 cut(s)	485, 581, 1046, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.