Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

13156358 .. 13162295

Gene Structure 5938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGTCCTCCTTCCCTTTCCTCGAATCCGTGATTGGTTTCATGATACTAATGTACTTCTTTGAGACTTATTTGGATACTCGGCAACACTCTGCTCTCAAACTTCCGACCCTTCCCAAAACTTTGGAAGGAGTAATCAGCCAAGAGAAGTTTGAGAAGTCGCGAGCCTACAGTCTTGAAAAGAGTCATTTCCATTTTGTTCATGAGTTTGTGACAATACTGATGGATTCAGCAATTTTGTTCTTTCGAGTTTTGCCTTGGTTTTGGAAGAAATCTGGAGACTTTGTGGTTTTGGCTGGCCTCAATGCCGAAAATGAAATACTGCATACACTTGCATTTTTAGCTGGTGTTACGATTTGGTCACAGATCACTGATTTGCCATTTTCTCTGTACTCCACATTTGTGGTTGAGGCACGTCATGGTTTCAACAAGCAAACAATATGGTTATTCTTTAGAGACATGTTGAAAGGAATTTGCCTTATGGCGATCCTCGGTCCACCGATTGTGGCGGCAATCATTGTGATTGTACAGAAAGGAGGTGCTTACTTGGCCATTTATCTTTGGGGATTCATGTTTGTGCTCTCTCTTGTTATGATGACGATCTACCCTATTCTAATAGCTCCACTCTTCAACAAGTTTACCCCTCTTCCGGAGGGTCCGCTCAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAATTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTACAAGGTCAAGCCATAGCAATGCCTATATGTACGGATTTTTTAAGAACAAGAGAATTGTCCTCTATGATACATTGATTCAGCAGTGCAAAAATGATGAAGAAATTGTAGCTGTTATTGCTCATGAGCTAGGCCATTGGAAGCTTAATCACACAATGTATTCATTTATTGCGGTGCAGATCCTTACACTTATGCAATTTGGGGGATACACTCTAGTAAGAAATTCGAGCAGTCTGTTCCAAAGTTTTGGGTTTGATACCCAGCCGGTCATCATTGGACTCATCATATTTCAGCACACCATTATCCCTGTTCAGCACCTAGTTAGCTTTGCTCTTAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGGCGCTTGGCTATGCTGCTTCACTTCGAGCTGGTCTTGTTAGGTTACAGGAAGAGAATTTGTCAGCTATGAACACTGATCCTTGGTACTCGGCGTATCACTATTCTCACCCACCGCTTGTCGAAAGATTAGCTGCAATTGATGAAGAGACCAAGAAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

427

Amino Acids

48.58

Weight (kDa)

6.93

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	29 - 212	7.6e-65	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	216 - 421	4.9e-50	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	661
AccII	CGCG	1 cut(s)	163
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	4 cut(s)	509, 659, 905, 1229
AclWI	GGATC	4 cut(s)	481, 739, 907, 1187
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	4 cut(s)	471, 955, 1091, 1171
AfaI	GTAC	5 cut(s)	56, 392, 528, 767, 1202
AfiI	CCNNNNNNNGG	1 cut(s)	649
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	179, 427, 466, 631, 709, 1091
AjiI	CACGTC	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AleI	CACNNNNGTG	1 cut(s)	401
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	4 cut(s)	59, 273, 450, 1256
AlwI	GGATC	4 cut(s)	481, 739, 907, 1187
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	3 cut(s)	298, 549, 865
ApeKI	GCWGC	2 cut(s)	1130, 1247
ApoI	RAATTY	4 cut(s)	471, 955, 1091, 1171
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	2 cut(s)	494, 656
AsuHPI	GGTGA	1 cut(s)	1214
AvaII	GGWCC	2 cut(s)	494, 656
BaeI	ACNNNNGTAYC	2 cut(s)	38, 71
BalI	TGGCCA	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	1117, 1234
BccI	CCATC	2 cut(s)	217, 722
BciVI	GTATCC	2 cut(s)	70, 932
BcoDI	GTCTC	4 cut(s)	59, 273, 450, 1256
BfaI	CTAG	3 cut(s)	863, 947, 1052
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	1121
BfuI	GTATCC	2 cut(s)	70, 932
BisI	GCNGC	3 cut(s)	510, 1131, 1248
BlsI	GCNGC	3 cut(s)	511, 1132, 1249
Bme18I	GGWCC	2 cut(s)	494, 656
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	494, 656
BmiI	GGNNCC	1 cut(s)	657
BmsI	GCATC	1 cut(s)	1093
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	662, 1113
BsaBI	GATNNNNATC	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	1256
BsaJI	CCNNGG	3 cut(s)	257, 490, 1196
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse118I	RCCGGY	1 cut(s)	997
Bse3DI	GCAATG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	599
BseAI	TCCGGA	1 cut(s)	649
BseDI	CCNNGG	3 cut(s)	257, 490, 1196
BseJI	GATNNNNATC	1 cut(s)	599
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	676
BseXI	GCAGC	2 cut(s)	1117, 1234
BseYI	CCCAGC	1 cut(s)	993
BsgI	GTGCAG	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	300, 551, 867
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	650, 998
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	4 cut(s)	59, 273, 450, 1256
BsnI	GGCC	3 cut(s)	300, 551, 867
Bso31I	GGTCTC	1 cut(s)	1256
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp13I	TCCGGA	1 cut(s)	649
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
Bsp68I	TCGCGA	1 cut(s)	163
BspACI	CCGC	4 cut(s)	509, 659, 905, 1229
BspANI	GGCC	3 cut(s)	300, 551, 867
BspCNI	CTCAG	1 cut(s)	675
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	163
BspHI	TCATGA	3 cut(s)	42, 202, 856
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	4 cut(s)	481, 739, 907, 1187
BspTNI	GGTCTC	1 cut(s)	1256
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	997
BsrGI	TGTACA	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	997
BssECI	CCNNGG	3 cut(s)	257, 490, 1196
BssMI	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
BssT1I	CCWWGG	2 cut(s)	257, 1196
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	4 cut(s)	632, 651, 1161, 1254
BstAUI	TGTACA	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	165, 298, 684
BstDEI	CTNAG	2 cut(s)	662, 1113
BstFNI	CGCG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	1121
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	6 cut(s)	369, 489, 603, 734, 915, 1195
BstMAI	GTCTC	4 cut(s)	59, 273, 450, 1256
BstMBI	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 548, 851
BstNSI	RCATGY	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	1117, 1234
BstX2I	RGATCY	2 cut(s)	731, 912
BstXI	CCANNNNNNTGG	3 cut(s)	124, 403, 980
BstYI	RGATCY	2 cut(s)	731, 912
BsuI	GTATCC	2 cut(s)	70, 932
BsuRI	GGCC	3 cut(s)	300, 551, 867
BtrI	CACGTC	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	3 cut(s)	369, 824, 1188
BtuMI	TCGCGA	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	165, 298, 684
CciI	TCATGA	3 cut(s)	42, 202, 856
CfoI	GCGC	1 cut(s)	1120
Cfr10I	RCCGGY	1 cut(s)	997
Cfr13I	GGNCC	2 cut(s)	494, 656
Csp6I	GTAC	5 cut(s)	55, 391, 527, 766, 1201
CviAII	CATG	6 cut(s)	43, 203, 419, 460, 571, 857
CviQI	GTAC	5 cut(s)	55, 391, 527, 766, 1201
DdeI	CTNAG	2 cut(s)	662, 1113
DpnI	GATC	6 cut(s)	368, 488, 602, 733, 914, 1194
DpnII	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	4 cut(s)	632, 651, 1161, 1254
EarI	CTCTTC	4 cut(s)	632, 651, 1161, 1254
Eco130I	CCWWGG	2 cut(s)	257, 1196
Eco31I	GGTCTC	1 cut(s)	1256
Eco47I	GGWCC	2 cut(s)	494, 656
EcoT14I	CCWWGG	2 cut(s)	257, 1196
ErhI	CCWWGG	2 cut(s)	257, 1196
FaeI	CATG	6 cut(s)	46, 206, 422, 463, 574, 860
FatI	CATG	6 cut(s)	42, 202, 418, 459, 570, 856
Fnu4HI	GCNGC	3 cut(s)	510, 1131, 1248
Fsp4HI	GCNGC	3 cut(s)	510, 1131, 1248
FspBI	CTAG	3 cut(s)	863, 947, 1052
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	3 cut(s)	510, 1131, 1248
GsaI	CCCAGC	1 cut(s)	997
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	1121
HaeIII	GGCC	3 cut(s)	300, 551, 867
HapII	CCGG	2 cut(s)	650, 998
HhaI	GCGC	1 cut(s)	1120
Hin1II	CATG	6 cut(s)	46, 206, 422, 463, 574, 860
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	7 cut(s)	5, 26, 184, 227, 567, 811, 1011
HpaII	CCGG	2 cut(s)	650, 998
HphI	GGTGA	1 cut(s)	1214
Hpy166II	GTNNAC	2 cut(s)	497, 639
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	7 cut(s)	43, 162, 176, 203, 276, 650, 857
Hpy8I	GTNNAC	2 cut(s)	497, 639
HpyAV	CCTTC	3 cut(s)	22, 122, 122
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	325, 335, 822, 910, 928, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 548, 851
HpyF3I	CTNAG	2 cut(s)	662, 1113
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	6 cut(s)	46, 206, 422, 463, 574, 860
HspAI	GCGC	1 cut(s)	1118
Kpn2I	TCCGGA	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	2 cut(s)	1117, 1234
LweI	GCATC	1 cut(s)	1093
MaeI	CTAG	3 cut(s)	863, 947, 1052
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	4 cut(s)	211, 349, 360, 1158
MalI	GATC	6 cut(s)	368, 488, 602, 733, 914, 1194
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
MboII	GAAGA	8 cut(s)	280, 619, 638, 681, 721, 845, 1178, 1271
MfeI	CAATTG	1 cut(s)	1251
MflI	RGATCY	2 cut(s)	731, 912
MhlI	GDGCHC	1 cut(s)	582
MlsI	TGGCCA	1 cut(s)	551
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	3 cut(s)	14, 193, 1005
MmeI	TCCRAC	1 cut(s)	131
Mox20I	TGGCCA	1 cut(s)	551
MroI	TCCGGA	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	3 cut(s)	777, 879, 1068
MslI	CAYNNNNRTG	3 cut(s)	401, 575, 753
Msp20I	TGGCCA	1 cut(s)	551
MspI	CCGG	2 cut(s)	650, 998
MunI	CAATTG	1 cut(s)	1251
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	341, 548, 851
NdeII	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
NlaIII	CATG	6 cut(s)	46, 206, 422, 463, 574, 860
NlaIV	GGNNCC	1 cut(s)	657
NmeAIII	GCCGAG	3 cut(s)	61, 1106, 1184
NmuCI	GTSAC	2 cut(s)	211, 360
NruI	TCGCGA	1 cut(s)	163
NspI	RCATGY	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	401
PagI	TCATGA	3 cut(s)	42, 202, 856
PciI	ACATGT	1 cut(s)	459
PfeI	GAWTC	4 cut(s)	26, 227, 567, 811
PkrI	GCNGC	3 cut(s)	511, 1132, 1249
PleI	GAGTC	3 cut(s)	13, 192, 1005
PpsI	GAGTC	3 cut(s)	13, 192, 1005
PscI	ACATGT	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	993
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	2 cut(s)	494, 656
PsuI	RGATCY	2 cut(s)	731, 912
RruI	TCGCGA	1 cut(s)	163
RsaI	GTAC	5 cut(s)	56, 392, 528, 767, 1202
RsaNI	GTAC	5 cut(s)	55, 391, 527, 766, 1201
RseI	CAYNNNNRTG	3 cut(s)	401, 575, 753
SaqAI	TTAA	3 cut(s)	777, 879, 1068
SatI	GCNGC	3 cut(s)	510, 1131, 1248
Sau3AI	GATC	6 cut(s)	366, 486, 600, 731, 912, 1192
Sau96I	GGNCC	2 cut(s)	494, 656
SchI	GAGTC	3 cut(s)	14, 193, 1005
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	1093
SfcI	CTRYAG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	494, 656
SmiMI	CAYNNNNRTG	3 cut(s)	401, 575, 753
SsiI	CCGC	4 cut(s)	509, 659, 905, 1229
SspMI	CTAG	3 cut(s)	863, 947, 1052
StyI	CCWWGG	2 cut(s)	257, 1196
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	5 cut(s)	24, 247, 959, 1141, 1236
TaqII	GACCGA	1 cut(s)	482
TatI	WGTACW	3 cut(s)	54, 390, 526
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	4 cut(s)	26, 227, 567, 811
Tru1I	TTAA	3 cut(s)	777, 879, 1068
Tru9I	TTAA	3 cut(s)	777, 879, 1068
TscAI	CASTG	3 cut(s)	376, 824, 1195
TseFI	GTSAC	2 cut(s)	211, 360
TseI	GCWGC	2 cut(s)	1130, 1247
Tsp45I	GTSAC	2 cut(s)	211, 360
TspDTI	ATGAA	8 cut(s)	31, 191, 330, 559, 846, 885, 1199, 1272
TspGWI	ACGGA	2 cut(s)	19, 783
TspRI	CASTG	3 cut(s)	376, 824, 1195
VpaK11BI	GGWCC	2 cut(s)	494, 656
XapI	RAATTY	4 cut(s)	471, 955, 1091, 1171
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	3 cut(s)	863, 947, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.