Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

33314097 .. 33324634

Gene Structure 10538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG150800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 625 bp

ATGAGCAATCCCATTAGTATTGTCATTGCATTGATTCTGAAGATCTATTTCTGTATTGGCTTACAAAAGTTAGTTTTTTTCTTCTACCAGATCACTGATTTGCCATTTTCTCTCTACTCCACATTTGTGGTTGAGGCACGTCATAGTTTCAATAAGAAAATGATATGGTTATTCTTCAGAGATATGTTGAAAAGAATTTGCCTTATGGCTATTCTTGGTCCGCCAATTGTGTCTGCAATTATTGTGATTGTGCAGCACACCATAATACCTGTCCAGCACCTAATTAGCTTTGCTCTTAACCTTGTTGGTGCTTTTGCTACGGAGCTTGGTTATGCCGCTTCACTTCGAGCTGGTCTTGTTAGGTTACAGGTGCATGATTATTTATATGAACTTCCCATCAAGACGCTTCCAGGAATAGGACGCATTTTAAAGGAGAAATTGAAGAAGCGAAATGTTTTGATTTATGGACAGTTGCGTGCGATTCCTAGAGTGTCTTTATTGATGAATCTGATGATAAAAGGCCTTGTTCACATTAGTGACACTAAAGCCCTTTTAATTTCTCAGGGTGACCACCTAAGTCCTCTGCAGCTACATTACTCTTCCTCCGTATGCACTTGTAACACAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

208

Amino Acids

23.5

Weight (kDa)

9.78

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	25 - 87	4.8e-18	CAAX prenyl protease N-terminal, five membrane helices

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 336
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	59, 160
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	151, 190, 442
AjiI	CACGTC	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	409
AleI	CACNNNNGTG	2 cut(s)	125, 534
AluBI	AGCT	4 cut(s)	288, 325, 350, 589
AluI	AGCT	4 cut(s)	288, 325, 350, 589
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	2 cut(s)	253, 586
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	265, 598
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	411
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	584
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	3 cut(s)	254, 336, 587
BlsI	GCNGC	3 cut(s)	255, 337, 588
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	575
BseXI	GCAGC	2 cut(s)	265, 598
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	416
BsnI	GGCC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	42, 90
BspACI	CCGC	2 cut(s)	221, 336
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	24
BssMI	GATC	2 cut(s)	42, 90
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	561, 575
BstEII	GGTNACC	1 cut(s)	566
BstKTI	GATC	2 cut(s)	45, 93
BstMBI	GATC	2 cut(s)	42, 90
BstNI	CCWGG	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	265, 598
BstX2I	RGATCY	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	522
BtrI	CACGTC	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	2 cut(s)	412, 429
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	8 cut(s)	60, 209, 288, 325, 350, 522, 548, 589
CviKI_1	RGCY	8 cut(s)	60, 209, 288, 325, 350, 522, 548, 589
DdeI	CTNAG	2 cut(s)	561, 575
DpnI	GATC	2 cut(s)	44, 92
DpnII	GATC	2 cut(s)	42, 90
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
EciI	GGCGGA	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	59, 160
Eco91I	GGTNACC	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	377
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	254, 336, 587
Fsp4HI	GCNGC	3 cut(s)	254, 336, 587
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	3 cut(s)	254, 336, 587
HaeIII	GGCC	1 cut(s)	522
HgaI	GACGC	2 cut(s)	412, 429
Hin1II	CATG	1 cut(s)	377
HinfI	GANTC	3 cut(s)	34, 481, 505
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	39, 179, 510
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	6 cut(s)	29, 236, 253, 373, 586, 612
HpyF3I	CTNAG	2 cut(s)	561, 575
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	42, 90
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	8 cut(s)	101, 282, 287, 336, 353, 396, 423, 548
Lsp1109I	GCAGC	2 cut(s)	265, 598
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	4 cut(s)	363, 536, 566, 617
MalI	GATC	2 cut(s)	44, 92
MboI	GATC	2 cut(s)	42, 90
MboII	GAAGA	5 cut(s)	52, 73, 166, 454, 591
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	6 cut(s)	195, 225, 237, 282, 437, 555
MnlI	CCTC	3 cut(s)	127, 591, 613
MseI	TTAA	3 cut(s)	297, 428, 554
MslI	CAYNNNNRTG	2 cut(s)	125, 534
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	411
NdeII	GATC	2 cut(s)	42, 90
NlaIII	CATG	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	536, 566
OliI	CACNNNNGTG	2 cut(s)	125, 534
PceI	AGGCCT	1 cut(s)	522
PfeI	GAWTC	3 cut(s)	34, 481, 505
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	255, 337, 588
Psp6I	CCWGG	1 cut(s)	409
PspEI	GGTNACC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	588
PsuI	RGATCY	1 cut(s)	42
RseI	CAYNNNNRTG	2 cut(s)	125, 534
SaqAI	TTAA	3 cut(s)	297, 428, 554
SatI	GCNGC	3 cut(s)	254, 336, 587
Sau3AI	GATC	2 cut(s)	42, 90
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	125, 534
Sse9I	AATT	6 cut(s)	195, 225, 237, 282, 437, 555
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	2 cut(s)	221, 336
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	346
TasI	AATT	6 cut(s)	195, 225, 237, 282, 437, 555
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	3 cut(s)	34, 481, 505
Tru1I	TTAA	3 cut(s)	297, 428, 554
Tru9I	TTAA	3 cut(s)	297, 428, 554
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	536, 566
TseI	GCWGC	2 cut(s)	253, 586
Tsp45I	GTSAC	2 cut(s)	536, 566
TspDTI	ATGAA	2 cut(s)	402, 518
TspGWI	ACGGA	2 cut(s)	335, 595
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.