Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49608095 .. 49698966

Gene Structure 90872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG269100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATGACAATCTACCCTATTCTAATTGCCCCACTCTTTCACAAGTTCACCCCTCTTCCAGAGGGTCAGCTACGAGAGAAAATTGAGACGCTTGCTTCATCCCTTGAGTTTCCATTGAAGAAGCTGTTTGTGGTTGATGGATCTACAAGGTCAACTCACAGCAATGCCTATATGTATGGATTTTTTAACAACAAGAGGATTGTCCTCTATGATACGCTGATTCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTGTTATAGCTCATGAGCTAGGCCATTGGAAGCGTAATCACATAGTGTACTTTTTAATTGCCAACCAGGAAGAGAATTTGTCAGCTATGAATATTGATCCTTGGTACTCAGCATATCACAACACTCACCCCACGCTTGTTGAAAGGTTAGCTGCAATTGATGAAGAGGCCAAGAAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

145

Amino Acids

16.82

Weight (kDa)

5.95

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	18 - 107	7.7e-28	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	148, 344
AcsI	RAATTY	1 cut(s)	328
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	302, 359
AgsI	TTSAA	2 cut(s)	118, 395
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	7 cut(s)	70, 124, 254, 263, 271, 338, 404
AluI	AGCT	7 cut(s)	70, 124, 254, 263, 271, 338, 404
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	148, 344
AoxI	GGCC	2 cut(s)	274, 420
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	40, 371
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	276, 422
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	276, 422
Bsp143I	GATC	2 cut(s)	140, 349
BspANI	GGCC	2 cut(s)	276, 422
BspCNI	CTCAG	1 cut(s)	374
BspHI	TCATGA	1 cut(s)	265
BspPI	GGATC	2 cut(s)	148, 344
BsrDI	GCAATG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	140, 349
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	320
Bst6I	CTCTTC	3 cut(s)	60, 318, 411
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	143, 352
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	140, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 260
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	276, 422
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	265
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	301, 358
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	9 cut(s)	70, 124, 254, 263, 271, 276, 338, 404, 422
CviKI_1	RGCY	9 cut(s)	70, 124, 254, 263, 271, 276, 338, 404, 422
CviQI	GTAC	2 cut(s)	301, 358
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	2 cut(s)	142, 351
DpnII	GATC	2 cut(s)	140, 349
DraIII	CACNNNGTG	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	60, 318, 411
EarI	CTCTTC	3 cut(s)	60, 318, 411
Eco130I	CCWWGG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	269
FaiI	YATR	9 cut(s)	171, 173, 177, 210, 260, 267, 296, 341, 367
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	276, 422
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	2 cut(s)	40, 371
Hpy166II	GTNNAC	3 cut(s)	48, 153, 301
Hpy188III	TCNNGA	2 cut(s)	59, 266
Hpy8I	GTNNAC	3 cut(s)	48, 153, 301
HpyCH4V	TGCA	2 cut(s)	231, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 260
HpyF3I	CTNAG	1 cut(s)	361
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	140, 349
LpnPI	CCDG	3 cut(s)	72, 305, 332
Lsp1109I	GCAGC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	142, 351
MboI	GATC	2 cut(s)	140, 349
MboII	GAAGA	4 cut(s)	47, 130, 335, 428
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	6 cut(s)	24, 81, 246, 309, 328, 408
MnlI	CCTC	6 cut(s)	55, 63, 189, 215, 235, 412
MseI	TTAA	2 cut(s)	186, 308
MslI	CAYNNNNRTG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	320
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	223, 260
NdeII	GATC	2 cut(s)	140, 349
NlaIII	CATG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	2 cut(s)	302, 359
RsaNI	GTAC	2 cut(s)	301, 358
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	186, 308
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	140, 349
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	9 cut(s)	72, 126, 152, 256, 265, 273, 340, 401, 406
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	6 cut(s)	24, 81, 246, 309, 328, 408
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	353
TasI	AATT	6 cut(s)	24, 81, 246, 309, 328, 408
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	186, 308
Tru9I	TTAA	2 cut(s)	186, 308
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	87, 356, 429
TspRI	CASTG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	328
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.