Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

48147607 .. 48150312

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATCGGTTTTATGATATTGATGTACAACTTTGAAACTTATTTGGATTTCCGCCAACATGCTGCTCTGAAACTTCCAACACTTCCTAAAACCTTGGAAGGAGTAATCAGCCAAGAAAAGTTTGAGAAGTCGAGAGCCTACTGTCTTGAAAGAAGCAACTTCCATTTTGTTCATGATTTTGTGACCTTACTCATGGACTCAGCAATTTTGTTCTATCGGATTTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTGTAGTCTTGGCTGGCCTCAATGCCCAAAATGAAGTACTACATACCCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGATCACAGACTTACCTTTCTCTTTGTACTCCACATTTGTGATCGAGGCTCGTCATGGTTTCAATAACCAAACAATATGGTTGTTCTTGAAAGACATGTTAAAAGAAATTTGTCTTTCTGTTATTATTGCCCCACCTATTGTGTCTGCAATCATTAAAGGAGGTGCTTACTTGGTCTTTTATCTTTGGGCGTTCATGCTTGTCCTCTCTTTTGTGATGATGACGATCTACCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCTCTTCCTGAGGGTCAGCTGAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCGAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGTAATGCCTATATGTATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCAGTGTAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTGTACTTATTTATTTCTACGCAGATCCGTATGCTTTTACACTTCGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCTAAGTTTTGGGTTTGATACTCAACCAGTAATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCGCTTCGAGCTAGTCTTGTTAGGCTACAGGAAGAGAATTTGTCAGCTATGAATACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAGCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

420

Amino Acids

48.27

Weight (kDa)

7.77

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 206	3.9e-57	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	209 - 414	9.3e-47	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AciI	CCGC	2 cut(s)	76, 1256
AclWI	GGATC	4 cut(s)	721, 787, 889, 1169
AcsI	RAATTY	3 cut(s)	465, 1073, 1153
AdeI	CACNNNGTG	1 cut(s)	871
AfaI	GTAC	6 cut(s)	50, 315, 386, 875, 1038, 1184
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	7 cut(s)	59, 173, 421, 448, 613, 691, 1073
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	267, 998
AlwI	GGATC	4 cut(s)	721, 787, 889, 1169
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	2 cut(s)	292, 847
ApeKI	GCWGC	2 cut(s)	86, 1229
ApoI	RAATTY	3 cut(s)	465, 1073, 1153
AsuHPI	GGTGA	2 cut(s)	613, 1250
AvaI	CYCGRG	1 cut(s)	677
AxyI	CCTNAGG	1 cut(s)	633
BbvCI	CCTCAGC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	73, 1216
BccI	CCATC	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	267, 998
BfaI	CTAG	5 cut(s)	833, 845, 1034, 1128, 1214
BfmI	CTRYAG	1 cut(s)	1142
BisI	GCNGC	2 cut(s)	87, 1230
BlsI	GCNGC	2 cut(s)	88, 1231
BmcAI	AGTACT	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	677
BmsI	GCATC	1 cut(s)	1075
BpmI	CTGGAG	1 cut(s)	925
Bpu10I	CCTNAGC	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	998
BsaJI	CCNNGG	3 cut(s)	117, 251, 1178
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	980
Bse21I	CCTNAGG	1 cut(s)	633
Bse8I	GATNNNNATC	1 cut(s)	581
BseDI	CCNNGG	3 cut(s)	117, 251, 1178
BseGI	GGATG	1 cut(s)	1204
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	4 cut(s)	237, 624, 635, 923
BseNI	ACTGG	1 cut(s)	980
BseXI	GCAGC	2 cut(s)	73, 1216
BshFI	GGCC	2 cut(s)	294, 849
BsiHKCI	CYCGRG	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	267, 998
BsnI	GGCC	2 cut(s)	294, 849
Bso31I	GGTCTC	1 cut(s)	998
BsoBI	CYCGRG	1 cut(s)	677
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
BspACI	CCGC	2 cut(s)	76, 1256
BspANI	GGCC	2 cut(s)	294, 849
BspCNI	CTCAG	4 cut(s)	236, 625, 636, 924
BspHI	TCATGA	2 cut(s)	196, 838
BspPI	GGATC	4 cut(s)	721, 787, 889, 1169
BspTNI	GGTCTC	1 cut(s)	998
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	980
BssECI	CCNNGG	3 cut(s)	117, 251, 1178
BssMI	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
BssT1I	CCWWGG	3 cut(s)	117, 251, 1178
Bst4CI	ACNGT	3 cut(s)	167, 734, 869
Bst6I	CTCTTC	3 cut(s)	633, 1120, 1143
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	292, 666, 1048
BstDEI	CTNAG	6 cut(s)	223, 633, 644, 932, 956, 1095
BstF5I	GGATG	1 cut(s)	1204
BstKTI	GATC	7 cut(s)	363, 402, 585, 716, 795, 897, 1177
BstMAI	GTCTC	2 cut(s)	267, 998
BstMBI	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 833
BstNSI	RCATGY	2 cut(s)	86, 457
BstSFI	CTRYAG	1 cut(s)	1142
BstV1I	GCAGC	2 cut(s)	73, 1216
BstX2I	RGATCY	2 cut(s)	713, 894
BstYI	RGATCY	2 cut(s)	713, 894
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	294, 849
BtsCI	GGATG	1 cut(s)	1204
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	3 cut(s)	788, 806, 874
Cac8I	GCNNGC	3 cut(s)	292, 666, 1048
CciI	TCATGA	2 cut(s)	196, 838
Csp6I	GTAC	6 cut(s)	49, 314, 385, 874, 1037, 1183
CviAII	CATG	7 cut(s)	83, 197, 217, 413, 454, 553, 839
CviQI	GTAC	6 cut(s)	49, 314, 385, 874, 1037, 1183
DdeI	CTNAG	6 cut(s)	223, 633, 644, 932, 956, 1095
DpnI	GATC	7 cut(s)	362, 401, 584, 715, 794, 896, 1176
DpnII	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
DraIII	CACNNNGTG	1 cut(s)	871
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	3 cut(s)	633, 1120, 1143
EarI	CTCTTC	3 cut(s)	633, 1120, 1143
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	3 cut(s)	117, 251, 1178
Eco31I	GGTCTC	1 cut(s)	998
Eco81I	CCTNAGG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	677
EcoT14I	CCWWGG	3 cut(s)	117, 251, 1178
ErhI	CCWWGG	3 cut(s)	117, 251, 1178
FaeI	CATG	7 cut(s)	86, 200, 220, 416, 457, 556, 842
FatI	CATG	7 cut(s)	82, 196, 216, 412, 453, 552, 838
Fnu4HI	GCNGC	2 cut(s)	87, 1230
FokI	GGATG	1 cut(s)	1191
Fsp4HI	GCNGC	2 cut(s)	87, 1230
FspBI	CTAG	5 cut(s)	833, 845, 1034, 1128, 1214
GluI	GCNGC	2 cut(s)	87, 1230
GsuI	CTGGAG	1 cut(s)	925
HaeIII	GGCC	2 cut(s)	294, 849
Hin1II	CATG	7 cut(s)	86, 200, 220, 416, 457, 556, 842
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	613, 1250
Hpy166II	GTNNAC	3 cut(s)	621, 874, 1039
Hpy188I	TCNGA	2 cut(s)	93, 243
Hpy188III	TCNNGA	8 cut(s)	156, 170, 197, 270, 445, 632, 839, 931
Hpy8I	GTNNAC	3 cut(s)	621, 874, 1039
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	167, 734, 869
HpyCH4V	TGCA	2 cut(s)	506, 1232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 833
HpyF3I	CTNAG	6 cut(s)	223, 633, 644, 932, 956, 1095
Hsp92II	CATG	7 cut(s)	86, 200, 220, 416, 457, 556, 842
Kzo9I	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
Lsp1109I	GCAGC	2 cut(s)	73, 1216
LweI	GCATC	1 cut(s)	1075
MaeI	CTAG	5 cut(s)	833, 845, 1034, 1128, 1214
MaeIII	GTNAC	2 cut(s)	205, 728
MalI	GATC	7 cut(s)	362, 401, 584, 715, 794, 896, 1176
MboI	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
MboII	GAAGA	6 cut(s)	274, 620, 663, 703, 1107, 1160
MfeI	CAATTG	1 cut(s)	1233
MflI	RGATCY	2 cut(s)	713, 894
MluCI	AATT	7 cut(s)	228, 465, 654, 819, 1073, 1153, 1233
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	4 cut(s)	458, 513, 759, 861
MslI	CAYNNNNRTG	2 cut(s)	395, 735
MspA1I	CMGCKG	1 cut(s)	643
MunI	CAATTG	1 cut(s)	1233
MwoI	GCNNNNNNNGC	2 cut(s)	335, 833
NdeII	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
NlaIII	CATG	7 cut(s)	86, 200, 220, 416, 457, 556, 842
NmeAIII	GCCGAG	2 cut(s)	1088, 1166
NmuCI	GTSAC	2 cut(s)	205, 728
NspI	RCATGY	2 cut(s)	86, 457
OliI	CACNNNNGTG	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	677
PagI	TCATGA	2 cut(s)	196, 838
PciI	ACATGT	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	88, 1231
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	453
PspXI	VCTCGAGB	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	713, 894
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	6 cut(s)	50, 315, 386, 875, 1038, 1184
RsaNI	GTAC	6 cut(s)	49, 314, 385, 874, 1037, 1183
RseI	CAYNNNNRTG	2 cut(s)	395, 735
SaqAI	TTAA	4 cut(s)	458, 513, 759, 861
SatI	GCNGC	2 cut(s)	87, 1230
Sau3AI	GATC	7 cut(s)	360, 399, 582, 713, 792, 894, 1174
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	1075
SfcI	CTRYAG	1 cut(s)	1142
Sfr274I	CTCGAG	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	2 cut(s)	395, 735
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	7 cut(s)	228, 465, 654, 819, 1073, 1153, 1233
SsiI	CCGC	2 cut(s)	76, 1256
SspMI	CTAG	5 cut(s)	833, 845, 1034, 1128, 1214
StyI	CCWWGG	3 cut(s)	117, 251, 1178
TaaI	ACNGT	3 cut(s)	167, 734, 869
TaqI	TCGA	5 cut(s)	155, 402, 678, 1123, 1218
TasI	AATT	7 cut(s)	228, 465, 654, 819, 1073, 1153, 1233
TatI	WGTACW	5 cut(s)	48, 313, 384, 873, 1036
Tru1I	TTAA	4 cut(s)	458, 513, 759, 861
Tru9I	TTAA	4 cut(s)	458, 513, 759, 861
TscAI	CASTG	3 cut(s)	795, 806, 874
TseFI	GTSAC	2 cut(s)	205, 728
TseI	GCWGC	2 cut(s)	86, 1229
Tsp45I	GTSAC	2 cut(s)	205, 728
TspDTI	ATGAA	4 cut(s)	185, 324, 541, 1181
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	3 cut(s)	795, 806, 874
XapI	RAATTY	3 cut(s)	465, 1073, 1153
XceI	RCATGY	2 cut(s)	86, 457
XhoI	CTCGAG	1 cut(s)	677
XspI	CTAG	5 cut(s)	833, 845, 1034, 1128, 1214
ZrmI	AGTACT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.