Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49785516 .. 49798967

Gene Structure 13452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATCGGTTTTATGATATTGATGTACAACTTTGAAACTTATTTGGATTTCCGCCAACATGCTGCTCTGAAACTTCCAACACTTCCTAAAACTTTGGAAGGAGTAATCAGCCAAGAAAAGTTTGAGAAGTCGAGAGCCTACTGTCTTGAAAGAAGCAACTTCCATTTTGTTCATGATTTTGTGACCTTACTTATGGACTCAGCAATTTTATTCTATCAGATTTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTTTAGTCTTAGCTGGCCTCAATGCCCAAAATGAAATACTACATACCCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGATCACAAACTTACCATTTTCTCTGTACTCCACATTTGTGATTGAGGCTCGTCATGGTTTCAATAACCAAACAATATGGTTGTTCTTGAAAGACATGTTAAAAGAAATTTGTCTTTCTGTTATTCTTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTAGAGAAAGGAGGTGCTTACTTGGTCATTTATCTTTGGGCGTTCATGCTTGTCCTCTCTTTTGTGATGATGACGATCTACCCTATTCTAATTGCCCCACTTTTTAACAAGTTCACCCCTCTTCCTGAGGGTCAGCTGAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGCAACGCCTATATGTATGGATTTTTTAAGAACAAGAGGACTGTCCTTTATGATACACTGATCCAGCAGTGTACAAATGATGAGGAAATTGTAGCTGTTCTAGCGCATGAGCTTGGCCATTGGAAGCTTAATCACAGTGTGTACTTATTTATTTCTACGCAGATCCGTAAGCTTTTACACTTCGGGGGATATGCTCTCCTTAGAAACTCCAGCAGTCTGTTTCTAAGTTTTGGGTTTGATACTCAACCAGTAATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGCTGATGCTTTTGCTAAGAAACTTGGCTATGCCTCTTCGCTTCGAGCTAGTCTTGTTAGACTACAGGAAGAGAATTTGTCAGCTATGAGTACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAAAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

416

Amino Acids

47.64

Weight (kDa)

8.24

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 210	6.3e-62	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	213 - 410	1.5e-37	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	4 cut(s)	733, 799, 901, 1157
AcoI	YGGCCR	1 cut(s)	859
AcsI	RAATTY	2 cut(s)	465, 1141
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	7 cut(s)	50, 386, 817, 887, 1050, 1159, 1172
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	59, 173, 421, 448, 703
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	267, 1010
AlwI	GGATC	4 cut(s)	733, 799, 901, 1157
AoxI	GGCC	2 cut(s)	292, 859
ApeKI	GCWGC	2 cut(s)	86, 1217
ApoI	RAATTY	2 cut(s)	465, 1141
AspLEI	GCGC	1 cut(s)	850
AsuHPI	GGTGA	2 cut(s)	625, 1238
AxyI	CCTNAGG	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	861
BbvCI	CCTCAGC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	73, 1204
BccI	CCATC	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	267, 1010
BfaI	CTAG	4 cut(s)	845, 1046, 1116, 1202
BfmI	CTRYAG	1 cut(s)	1130
BisI	GCNGC	2 cut(s)	87, 1218
BlsI	GCNGC	2 cut(s)	88, 1219
BmcAI	AGTACT	1 cut(s)	1159
BmsI	GCATC	1 cut(s)	1063
BpmI	CTGGAG	1 cut(s)	937
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	2 cut(s)	251, 1166
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	992
Bse21I	CCTNAGG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	251, 1166
BseGI	GGATG	1 cut(s)	1192
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	237, 636, 647
BseNI	ACTGG	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	73, 1204
BshFI	GGCC	2 cut(s)	294, 861
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	267, 1010
BsnI	GGCC	2 cut(s)	294, 861
Bso31I	GGTCTC	1 cut(s)	1010
Bsp1407I	TGTACA	2 cut(s)	48, 815
Bsp143I	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	294, 861
BspCNI	CTCAG	3 cut(s)	236, 637, 648
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	4 cut(s)	733, 799, 901, 1157
BspTNI	GGTCTC	1 cut(s)	1010
BsrGI	TGTACA	2 cut(s)	48, 815
BsrI	ACTGG	1 cut(s)	992
BssECI	CCNNGG	2 cut(s)	251, 1166
BssMI	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
BssT1I	CCWWGG	2 cut(s)	251, 1166
Bst4CI	ACNGT	3 cut(s)	167, 787, 881
Bst6I	CTCTTC	3 cut(s)	645, 1108, 1131
BstAUI	TGTACA	2 cut(s)	48, 815
BstC8I	GCNNGC	3 cut(s)	292, 678, 1060
BstDEI	CTNAG	7 cut(s)	223, 286, 645, 656, 944, 968, 1083
BstF5I	GGATG	1 cut(s)	1192
BstHHI	GCGC	1 cut(s)	850
BstKTI	GATC	6 cut(s)	363, 597, 728, 807, 909, 1165
BstMAI	GTCTC	2 cut(s)	267, 1010
BstMBI	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 845
BstNSI	RCATGY	2 cut(s)	86, 457
BstSFI	CTRYAG	1 cut(s)	1130
BstV1I	GCAGC	2 cut(s)	73, 1204
BstX2I	RGATCY	2 cut(s)	725, 906
BstYI	RGATCY	2 cut(s)	725, 906
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	294, 861
BtsCI	GGATG	1 cut(s)	1192
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	3 cut(s)	800, 818, 886
Cac8I	GCNNGC	3 cut(s)	292, 678, 1060
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	850
Csp6I	GTAC	7 cut(s)	49, 385, 816, 886, 1049, 1158, 1171
CviAII	CATG	6 cut(s)	83, 197, 413, 454, 565, 851
CviQI	GTAC	7 cut(s)	49, 385, 816, 886, 1049, 1158, 1171
DdeI	CTNAG	7 cut(s)	223, 286, 645, 656, 944, 968, 1083
DpnI	GATC	6 cut(s)	362, 596, 727, 806, 908, 1164
DpnII	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
DraIII	CACNNNGTG	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	859
Eam1104I	CTCTTC	3 cut(s)	645, 1108, 1131
EarI	CTCTTC	3 cut(s)	645, 1108, 1131
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	251, 1166
Eco31I	GGTCTC	1 cut(s)	1010
Eco81I	CCTNAGG	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	251, 1166
ErhI	CCWWGG	2 cut(s)	251, 1166
FaeI	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
FatI	CATG	6 cut(s)	82, 196, 412, 453, 564, 850
Fnu4HI	GCNGC	2 cut(s)	87, 1218
FokI	GGATG	1 cut(s)	1179
Fsp4HI	GCNGC	2 cut(s)	87, 1218
FspBI	CTAG	4 cut(s)	845, 1046, 1116, 1202
GlaI	GCGC	1 cut(s)	849
GluI	GCNGC	2 cut(s)	87, 1218
GsuI	CTGGAG	1 cut(s)	937
HaeIII	GGCC	2 cut(s)	294, 861
HhaI	GCGC	1 cut(s)	850
Hin1II	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
Hin6I	GCGC	1 cut(s)	848
HinP1I	GCGC	1 cut(s)	848
HindIII	AAGCTT	2 cut(s)	869, 914
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	625, 1238
Hpy166II	GTNNAC	4 cut(s)	633, 816, 886, 1051
Hpy188I	TCNGA	2 cut(s)	93, 243
Hpy188III	TCNNGA	6 cut(s)	156, 170, 197, 270, 445, 644
Hpy8I	GTNNAC	4 cut(s)	633, 816, 886, 1051
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	167, 787, 881
HpyCH4V	TGCA	2 cut(s)	506, 1220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 845
HpyF3I	CTNAG	7 cut(s)	223, 286, 645, 656, 944, 968, 1083
Hsp92II	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
HspAI	GCGC	1 cut(s)	848
Kzo9I	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
LpnPI	CCDG	9 cut(s)	255, 276, 324, 657, 821, 967, 1005, 1052, 1118
Lsp1109I	GCAGC	2 cut(s)	73, 1204
LweI	GCATC	1 cut(s)	1063
MaeI	CTAG	4 cut(s)	845, 1046, 1116, 1202
MaeIII	GTNAC	2 cut(s)	205, 740
MalI	GATC	6 cut(s)	362, 596, 727, 806, 908, 1164
MboI	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
MboII	GAAGA	6 cut(s)	274, 632, 675, 715, 1095, 1148
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	2 cut(s)	725, 906
MlsI	TGGCCA	1 cut(s)	861
MluCI	AATT	8 cut(s)	228, 465, 516, 609, 666, 831, 1141, 1221
MluNI	TGGCCA	1 cut(s)	861
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	125
Mox20I	TGGCCA	1 cut(s)	861
MscI	TGGCCA	1 cut(s)	861
MseI	TTAA	4 cut(s)	458, 624, 771, 873
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	861
MspA1I	CMGCKG	1 cut(s)	655
MunI	CAATTG	1 cut(s)	1221
MwoI	GCNNNNNNNGC	2 cut(s)	335, 845
NdeII	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
NlaIII	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
NmeAIII	GCCGAG	1 cut(s)	1154
NmuCI	GTSAC	2 cut(s)	205, 740
NspI	RCATGY	2 cut(s)	86, 457
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	88, 1219
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	725, 906
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	7 cut(s)	50, 386, 817, 887, 1050, 1159, 1172
RsaNI	GTAC	7 cut(s)	49, 385, 816, 886, 1049, 1158, 1171
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	458, 624, 771, 873
SatI	GCNGC	2 cut(s)	87, 1218
Sau3AI	GATC	6 cut(s)	360, 594, 725, 804, 906, 1162
ScaI	AGTACT	1 cut(s)	1159
SchI	GAGTC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	1063
SfcI	CTRYAG	1 cut(s)	1130
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	8 cut(s)	228, 465, 516, 609, 666, 831, 1141, 1221
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	4 cut(s)	845, 1046, 1116, 1202
StyI	CCWWGG	2 cut(s)	251, 1166
TaaI	ACNGT	3 cut(s)	167, 787, 881
TaqI	TCGA	3 cut(s)	155, 1111, 1206
TasI	AATT	8 cut(s)	228, 465, 516, 609, 666, 831, 1141, 1221
TatI	WGTACW	6 cut(s)	48, 384, 815, 885, 1048, 1157
Tru1I	TTAA	4 cut(s)	458, 624, 771, 873
Tru9I	TTAA	4 cut(s)	458, 624, 771, 873
TscAI	CASTG	3 cut(s)	807, 818, 886
TseFI	GTSAC	2 cut(s)	205, 740
TseI	GCWGC	2 cut(s)	86, 1217
Tsp45I	GTSAC	2 cut(s)	205, 740
TspDTI	ATGAA	3 cut(s)	185, 324, 553
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	3 cut(s)	807, 818, 886
XapI	RAATTY	2 cut(s)	465, 1141
XceI	RCATGY	2 cut(s)	86, 457
XspI	CTAG	4 cut(s)	845, 1046, 1116, 1202
ZrmI	AGTACT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.