Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

27975410 .. 27978021

Gene Structure 2612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAAGTTACAGTTTTGGAAATTTATGATGAGGAGATTTATGATGTGTTGTCTAGTTATGGTGGTGGTGGTGGGTTTGGGTTTCAATGGCCTGGAGGGAATGGCTCCAATTCTAAGAGGTGTAAGTTTGGGTTTGGAGGACTGTTCTGGGTCTCTGTTTGTTTTGGATGGTTTTGTATCACTGATTTGCCATTTTCTCTCTACTCCACATTTGTGGTTGAGGCACGTCATAGTTTCAATAAGCAAATGATATGGTTATTCTTCAGAGATATGTTGAAAGGAATTTGCCTTATGGCTATTCTTGGTCCACCAATTGTGTCTGCAATTATTGTGATTGTGCAGCAAAAAGGAGGTGCTTACTTGGCTATTTATCTTTGGGGATTCATGTTTGTGCTCTCTCTTGTTATGATGATGATCTACCCTAACATAGGGCATCATAGAGATGATTGTTCATGTCTTGTCTACCTATCATTTGTTCCCAGCTATATAATGTCTTTTGACCTCACTTTGTTGTTTGCAGCACACCATAATACCTGTATGTATTTACAGAAAAAGATGTTAGCTTTGATCCAAATTATTTCTGGAAAGATGGCCAGTCATCATGGGTTTTTGTGCATTTATATGGATTTTGAGGATCATTTGGTTCACTATGTGCACATTAATTATATATGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

226

Amino Acids

25.67

Weight (kDa)

6.53

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	47 - 143	6.5e-31	CAAX prenyl protease N-terminal, five membrane helices

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	562, 642
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	2 cut(s)	21, 282
AcuI	CTGAAG	1 cut(s)	247
AdeI	CACNNNGTG	1 cut(s)	652
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	86, 238, 277
AjiI	CACGTC	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	91
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	483, 563
AluI	AGCT	2 cut(s)	483, 563
Alw21I	GWGCWC	2 cut(s)	396, 657
Alw26I	GTCTC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	653
AlwI	GGATC	2 cut(s)	562, 642
AoxI	GGCC	2 cut(s)	89, 591
ApaLI	GTGCAC	1 cut(s)	653
ApeKI	GCWGC	2 cut(s)	340, 518
ApoI	RAATTY	2 cut(s)	21, 282
AseI	ATTAAT	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	657
BalI	TGGCCA	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	396, 657
BbvI	GCAGC	2 cut(s)	352, 530
BccI	CCATC	2 cut(s)	162, 583
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	674
BisI	GCNGC	2 cut(s)	341, 519
BlsI	GCNGC	2 cut(s)	342, 520
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	657
BseXI	GCAGC	2 cut(s)	352, 530
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	91, 593
BsiHKAI	GWGCWC	2 cut(s)	396, 657
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	91, 593
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	396, 657
Bsp143I	GATC	3 cut(s)	414, 567, 634
BspANI	GGCC	2 cut(s)	91, 593
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	562, 642
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	414, 567, 634
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	13, 144
BstDEI	CTNAG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	417, 570, 637
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	3 cut(s)	414, 567, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	674
BstSLI	GKGCMC	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	352, 530
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	91, 593
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	305
CviAII	CATG	3 cut(s)	385, 453, 602
CviJI	RGCY	7 cut(s)	91, 105, 296, 365, 483, 563, 593
CviKI_1	RGCY	7 cut(s)	91, 105, 296, 365, 483, 563, 593
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	416, 569, 636
DpnII	GATC	3 cut(s)	414, 567, 634
DraIII	CACNNNGTG	1 cut(s)	652
EaeI	YGGCCR	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	388, 456, 605
FatI	CATG	3 cut(s)	384, 452, 601
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	341, 519
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	341, 519
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	2 cut(s)	341, 519
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	91, 593
Hin1II	CATG	3 cut(s)	388, 456, 605
HinfI	GANTC	1 cut(s)	381
Hpy166II	GTNNAC	4 cut(s)	308, 463, 646, 655
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	582
Hpy8I	GTNNAC	4 cut(s)	308, 463, 646, 655
HpyCH4III	ACNGT	2 cut(s)	13, 144
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	6 cut(s)	4, 323, 340, 518, 615, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	388, 456, 605
Kzo9I	GATC	3 cut(s)	414, 567, 634
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	78, 105, 133, 493, 547, 567, 607
Lsp1109I	GCAGC	2 cut(s)	352, 530
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	416, 569, 636
MboI	GATC	3 cut(s)	414, 567, 634
MboII	GAAGA	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	396, 657
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	7 cut(s)	21, 109, 282, 312, 324, 573, 661
MluNI	TGGCCA	1 cut(s)	593
MnlI	CCTC	8 cut(s)	25, 89, 111, 131, 214, 344, 512, 625
Mox20I	TGGCCA	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	4 cut(s)	212, 389, 441, 620
Msp20I	TGGCCA	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	3 cut(s)	414, 567, 634
NlaIII	CATG	3 cut(s)	388, 456, 605
NlaIV	GGNNCC	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	342, 520
PshBI	ATTAAT	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	305
RseI	CAYNNNNRTG	4 cut(s)	212, 389, 441, 620
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	2 cut(s)	341, 519
Sau3AI	GATC	3 cut(s)	414, 567, 634
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	2 cut(s)	396, 657
SetI	ASST	8 cut(s)	122, 229, 355, 468, 485, 504, 536, 565
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	674
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	4 cut(s)	212, 389, 441, 620
Sse9I	AATT	7 cut(s)	21, 109, 282, 312, 324, 573, 661
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	13, 144
TaiI	ACGT	1 cut(s)	229
TasI	AATT	7 cut(s)	21, 109, 282, 312, 324, 573, 661
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	340, 518
TspDTI	ATGAA	2 cut(s)	373, 441
TspRI	CASTG	1 cut(s)	187
VneI	GTGCAC	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	660
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	2 cut(s)	21, 282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.