Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

47749454 .. 47749708

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0302100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAATAATGGGGTGGATGAGTTGCGCCCTTTGAAGACTGTGATTGATTATTGTCTTCACCTTCAGGCTGGTTTTTCAGAGTGTATTATCAGCCATGTGTTTCGGGAAGTTAATACGGTTGCTGATGCACTATCAAGATGCAATTTATCTGCTGAGATCGGTGCCATCTACTTTGAGCAACCTCCTCCACAGATCACTAGTTTTCTGTTAGATGATTTGTGTGAAGTCCTTAGATACATGAAAGTTGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

84

Amino Acids

9.46

Weight (kDa)

4.71

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	41, 47
BccI	CCATC	1 cut(s)	173
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	115, 128
BpiI	GAAGAC	2 cut(s)	41, 47
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	156, 192
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	161
BssMI	GATC	2 cut(s)	156, 192
Bst4CI	ACNGT	2 cut(s)	40, 118
BstDEI	CTNAG	2 cut(s)	153, 230
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	159, 195
BstMBI	GATC	2 cut(s)	156, 192
BstV2I	GAAGAC	2 cut(s)	41, 47
BtsCI	GGATG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	27
CviAII	CATG	2 cut(s)	95, 238
CviJI	RGCY	2 cut(s)	68, 93
CviKI_1	RGCY	2 cut(s)	68, 93
DdeI	CTNAG	2 cut(s)	153, 230
DpnI	GATC	2 cut(s)	158, 194
DpnII	GATC	2 cut(s)	156, 192
Eco57I	CTGAAG	1 cut(s)	47
FaeI	CATG	2 cut(s)	98, 241
FaiI	YATR	2 cut(s)	96, 239
FatI	CATG	2 cut(s)	94, 237
FokI	GGATG	1 cut(s)	29
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	98, 241
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	104, 135
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	40, 118
HpyCH4V	TGCA	2 cut(s)	128, 141
HpyF3I	CTNAG	2 cut(s)	153, 230
Hsp92II	CATG	2 cut(s)	98, 241
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	156, 192
LpnPI	CCDG	2 cut(s)	50, 54
LweI	GCATC	2 cut(s)	115, 128
MaeI	CTAG	1 cut(s)	198
MalI	GATC	2 cut(s)	158, 194
MboI	GATC	2 cut(s)	156, 192
MboII	GAAGA	2 cut(s)	46, 47
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	2 cut(s)	192, 195
MseI	TTAA	1 cut(s)	111
NdeII	GATC	2 cut(s)	156, 192
NlaIII	CATG	2 cut(s)	98, 241
NlaIV	GGNNCC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	156, 192
SetI	ASST	2 cut(s)	63, 184
SfaNI	GCATC	2 cut(s)	115, 128
SgeI	CNNG	7 cut(s)	77, 81, 107, 116, 147, 210, 250
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	40, 118
TasI	AATT	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	17, 254
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.