Rorug01G0255600

CAAX prenyl protease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
36523866 .. 36526318
2453 bp
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UTR
Exon/CDS
Intron
Rorug01G0255600.1

Sequence Viewer

Length: 498 bp
ATGGTTGATCTACCAATGGGAAATAATAAAAAGGAGCAAAGTTTAGGGATATGGTCTATTGAAGATGGTGAAGAACCCAAGTCAGCAGCTATTAGGGAACCACAAGAAGAGACTCGGCCTATAGAAGGCCTCTTCAACTCTTGTGGGAGTGATTCTGTCTCTTTCATTGTTGTAGGGGAAAAAGCTTGCTATTTGTCTGCAGCTACTAAAAGTTCAGTTATATTATGTCTTGAAAGCCTTACAGGAAATGGGTGCTTTCGAGGTCTTGATCGCTTTCTTGCTGGTGATGATGTGAAGGAAAAAAAGCCCGACCCTTCAATTTATCTTATAGCTGCCAAGATATTTCATAAGGAGCCATTCTTCTATGGACATGATAACTACGATCAGCTAGCGAAAATAGCAGAGGTTCCAGATGCAACTAGTGACCATGAAATTCGAAGGGAGTCTGTAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGACTGA

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

4.63

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 5 cut(s) 62, 136, 233, 318, 474
AhlI ACTAGT 1 cut(s) 419
AluBI AGCT 5 cut(s) 89, 185, 203, 332, 388
AluI AGCT 5 cut(s) 89, 185, 203, 332, 388
Alw26I GTCTC 2 cut(s) 104, 163
AoxI GGCC 2 cut(s) 116, 127
ApeKI GCWGC 3 cut(s) 86, 200, 332
ApoI RAATTY 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 80, 296
AsuII TTCGAA 1 cut(s) 436
AsuNHI GCTAGC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 98, 212, 319
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 104, 163
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 2 cut(s) 389, 420
BfmI CTRYAG 3 cut(s) 120, 198, 447
BisI GCNGC 3 cut(s) 87, 201, 333
BlsI GCNGC 3 cut(s) 88, 202, 334
BmiI GGNNCC 3 cut(s) 99, 354, 408
BmsI GCATC 1 cut(s) 403
BmtI GCTAGC 1 cut(s) 392
Bpu14I TTCGAA 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 495
BseXI GCAGC 3 cut(s) 98, 212, 319
BshFI GGCC 2 cut(s) 118, 129
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 104, 163
BsnI GGCC 2 cut(s) 118, 129
Bsp119I TTCGAA 1 cut(s) 436
Bsp143I GATC 3 cut(s) 7, 268, 382
BspANI GGCC 2 cut(s) 118, 129
BspLI GGNNCC 3 cut(s) 99, 354, 408
BspMAI CTGCAG 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 392
BspT104I TTCGAA 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 495
BssMI GATC 3 cut(s) 7, 268, 382
Bst6I CTCTTC 2 cut(s) 102, 137
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 187, 390
BstENI CCTNNNNNAGG 1 cut(s) 123
BstKTI GATC 3 cut(s) 10, 271, 385
BstMAI GTCTC 2 cut(s) 104, 163
BstMBI GATC 3 cut(s) 7, 268, 382
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstSFI CTRYAG 3 cut(s) 120, 198, 447
BstV1I GCAGC 3 cut(s) 98, 212, 319
BsuRI GGCC 2 cut(s) 118, 129
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 187, 390
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 2 cut(s) 371, 428
DpnI GATC 3 cut(s) 9, 270, 384
DpnII GATC 3 cut(s) 7, 268, 382
Eam1104I CTCTTC 2 cut(s) 102, 137
EarI CTCTTC 2 cut(s) 102, 137
Eco147I AGGCCT 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 123
FaeI CATG 2 cut(s) 374, 431
FaiI YATR 9 cut(s) 52, 122, 221, 226, 329, 348, 366, 372, 429
FatI CATG 2 cut(s) 370, 427
Fnu4HI GCNGC 3 cut(s) 87, 201, 333
Fsp4HI GCNGC 3 cut(s) 87, 201, 333
FspBI CTAG 2 cut(s) 389, 420
GluI GCNGC 3 cut(s) 87, 201, 333
HaeIII GGCC 2 cut(s) 118, 129
Hin1II CATG 2 cut(s) 374, 431
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 5 cut(s) 112, 152, 443, 463, 470
HphI GGTGA 2 cut(s) 80, 296
Hpy188III TCNNGA 4 cut(s) 230, 266, 410, 467
HpyAV CCTTC 5 cut(s) 119, 289, 324, 432, 452
HpyCH4V TGCA 2 cut(s) 200, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
Hsp92II CATG 2 cut(s) 374, 431
Kzo9I GATC 3 cut(s) 7, 268, 382
LmnI GCTCC 2 cut(s) 34, 352
LpnPI CCDG 4 cut(s) 228, 267, 423, 480
Lsp1109I GCAGC 3 cut(s) 98, 212, 319
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 389, 420
MaeIII GTNAC 1 cut(s) 422
MalI GATC 3 cut(s) 9, 270, 384
MboI GATC 3 cut(s) 7, 268, 382
MboII GAAGA 6 cut(s) 74, 83, 119, 124, 352, 467
MluCI AATT 2 cut(s) 318, 432
MlyI GAGTC 2 cut(s) 106, 452
MnlI CCTC 3 cut(s) 140, 254, 397
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 3 cut(s) 7, 268, 382
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 2 cut(s) 374, 431
NlaIV GGNNCC 3 cut(s) 99, 354, 408
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 422
NspV TTCGAA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 129
PfeI GAWTC 3 cut(s) 152, 463, 470
PkrI GCNGC 3 cut(s) 88, 202, 334
PleI GAGTC 2 cut(s) 106, 451
PpsI GAGTC 2 cut(s) 106, 451
PspN4I GGNNCC 3 cut(s) 99, 354, 408
PstI CTGCAG 1 cut(s) 202
SatI GCNGC 3 cut(s) 87, 201, 333
Sau3AI GATC 3 cut(s) 7, 268, 382
SchI GAGTC 2 cut(s) 106, 452
SetI ASST 7 cut(s) 91, 187, 205, 265, 334, 390, 408
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 3 cut(s) 120, 198, 447
SfuI TTCGAA 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 2 cut(s) 318, 432
SseBI AGGCCT 1 cut(s) 129
SspMI CTAG 2 cut(s) 389, 420
StuI AGGCCT 1 cut(s) 129
TaqI TCGA 2 cut(s) 259, 436
TasI AATT 2 cut(s) 318, 432
TfiI GAWTC 3 cut(s) 152, 463, 470
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 3 cut(s) 86, 200, 332
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 154, 335, 444
TspRI CASTG 1 cut(s) 484
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 1 cut(s) 432
XspI CTAG 2 cut(s) 389, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.