Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

51754993 .. 51758046

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG253400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCGTTCCCATTCTTGGAAGTAGTTGTTGGTTCTATGATATTGATGTACATATTTGAAACTTACTTGGATTTGAGGCAACATTCAGCACTCAAACTTCCAACACTTCCTAAAACTTTGGAAGGAGTAATCAGCCAAGAGAAGTTTGAGAAGTCGCGAGCCTACTGTCTTGAAAGAAGCCACTTCCGTTTTCTTCGTCAGTTAGTGAGAATACTTGTGGAATCAGCAATTTTGTTCTTTAAGGTTTTGCCTTGGTTTTGGAAGAAATCAGGACACTTCGTAGATTTAGTTGGCCTCAATGAAGAAAATGAAATACTGCATACCCTTGCATTTTTAGCTGGTGTGATGATTTGGTTAGAGATCACAAATTTACCATTTTCTCTCTACTCCATATTTGTGATCGAGGCCCGTCATGGTTTTAATAAGCAAACAATATGGTTATTTTTTAGTGACAGGCTTAAAGGAATTTGTCTTTCTGTTATTCTTGTCCCACCTATTGTGTCTGCAGCAATTTTAATTGTAAAGAAAGAAGGTGCTTACTCCGTCATTTATCTGTGGGTGCTCACGTTTGTTCTTTCTCTTGTGATGATGACAATCTACCCTATTCTAATAGCCCCACTCTTTCACAAGTTCACCCCTCTTCCAGAGGGTCAGCTACGAGAGAAAATTGAGACGCTTGCTTCATCCCTTGAGTTTCCATTGAAGAAGCTGTTTGTGGTTGATGGATCCAAAAGGTCAAGTCACAGCAATGCCTATATGTATGGATTTTTCAACAACAAGAGGATTGTCCTCTATGATACACTGATTCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTGTTATAGCTCATGAGCTAGGCCATTGGAAGCGTAATCACATAGTGTACTTTTTAATTGCCAACCAGATCTGTGCACTTCTATACATTGGGGGCTATACTCTTGTGAGGAACTGGAGTAGTCTGTTTCAAAGTTTTGGGTTTCATACCAGACCACTAATCATTGTTCTCATCATATTTCAGTATGCAATAACACCTATTCAAAATCTAGTATACTTTGCTGGTAACCTTGTGAGCCGAGCTTTTGAATATCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCCTCGATTCGAGCCAGTCTGGTTAGGCTACAGGAAGAGAATTTGTCAGCTATGAATATTGATCCTTGGTACTCAGCATATCACAACACTCACCCCACGCTTGTTGAAAGGTTAGCTGCAATTGGTCAGACGGACAAGGAGGAATGCAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

426

Amino Acids

49.03

Weight (kDa)

8.76

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 210	8.3e-58	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	213 - 417	5.1e-47	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1050
AccII	CGCG	1 cut(s)	157
AclWI	GGATC	3 cut(s)	720, 733, 1181
AcsI	RAATTY	3 cut(s)	367, 465, 1165
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	3 cut(s)	50, 887, 1196
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	8 cut(s)	59, 173, 703, 772, 968, 1040, 1085, 1232
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	9 cut(s)	338, 655, 709, 839, 848, 856, 1079, 1175, 1241
AluI	AGCT	9 cut(s)	338, 655, 709, 839, 848, 856, 1079, 1175, 1241
Alw21I	GWGCWC	2 cut(s)	564, 916
Alw26I	GTCTC	1 cut(s)	665
Alw44I	GTGCAC	1 cut(s)	912
AlwI	GGATC	3 cut(s)	720, 733, 1181
AoxI	GGCC	3 cut(s)	292, 405, 859
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	2 cut(s)	506, 1241
ApoI	RAATTY	3 cut(s)	367, 465, 1165
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	625, 1208
BaeGI	GKGCMC	1 cut(s)	916
BamHI	GGATCC	1 cut(s)	725
Bbv12I	GWGCWC	2 cut(s)	564, 916
BbvI	GCAGC	2 cut(s)	518, 1228
BccI	CCATC	1 cut(s)	716
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	2 cut(s)	857, 1046
BfmI	CTRYAG	2 cut(s)	504, 1154
BglII	AGATCT	1 cut(s)	906
BisI	GCNGC	2 cut(s)	507, 1242
BlsI	GCNGC	2 cut(s)	508, 1243
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	727
BmsI	GCATC	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	973
BpuEI	CTTGAG	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	251, 1190
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	956, 1140
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	251, 1190
BseGI	GGATG	1 cut(s)	683
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	1 cut(s)	1212
BseNI	ACTGG	2 cut(s)	956, 1140
BseRI	GAGGAG	1 cut(s)	1117
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	2 cut(s)	518, 1228
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	294, 407, 861
BsiHKAI	GWGCWC	2 cut(s)	564, 916
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	665
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	1274
BsnI	GGCC	3 cut(s)	294, 407, 861
Bsp1286I	GDGCHC	2 cut(s)	564, 916
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	360, 399, 725, 906, 1186
Bsp68I	TCGCGA	1 cut(s)	157
BspANI	GGCC	3 cut(s)	294, 407, 861
BspCNI	CTCAG	1 cut(s)	1211
BspFNI	CGCG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	727
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	3 cut(s)	720, 733, 1181
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	956, 1140
BssECI	CCNNGG	2 cut(s)	251, 1190
BssMI	GATC	5 cut(s)	360, 399, 725, 906, 1186
BssNAI	GTATAC	1 cut(s)	1051
BssT1I	CCWWGG	2 cut(s)	251, 1190
Bst1107I	GTATAC	1 cut(s)	1051
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	645, 1155
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	159, 678
BstDEI	CTNAG	2 cut(s)	1107, 1198
BstEII	GGTNACC	1 cut(s)	1061
BstF5I	GGATG	1 cut(s)	683
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	5 cut(s)	363, 402, 728, 909, 1189
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	5 cut(s)	360, 399, 725, 906, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 845
BstPI	GGTNACC	1 cut(s)	1061
BstSFI	CTRYAG	2 cut(s)	504, 1154
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	518, 1228
BstX2I	RGATCY	2 cut(s)	725, 906
BstYI	RGATCY	2 cut(s)	725, 906
BstZ17I	GTATAC	1 cut(s)	1051
BsuRI	GGCC	3 cut(s)	294, 407, 861
BtsCI	GGATG	1 cut(s)	683
BtsI	GCAGTG	2 cut(s)	818, 1279
BtsIMutI	CAGTG	3 cut(s)	800, 818, 1279
BtuMI	TCGCGA	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	159, 678
CciI	TCATGA	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	49, 886, 1195
CspCI	CAANNNNNGTGG	2 cut(s)	1210, 1245
CviAII	CATG	3 cut(s)	413, 851, 1278
CviQI	GTAC	3 cut(s)	49, 886, 1195
DdeI	CTNAG	2 cut(s)	1107, 1198
DpnI	GATC	5 cut(s)	362, 401, 727, 908, 1188
DpnII	GATC	5 cut(s)	360, 399, 725, 906, 1186
DraIII	CACNNNGTG	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	645, 1155
EarI	CTCTTC	2 cut(s)	645, 1155
Eco130I	CCWWGG	2 cut(s)	251, 1190
Eco91I	GGTNACC	1 cut(s)	1061
EcoO65I	GGTNACC	1 cut(s)	1061
EcoT14I	CCWWGG	2 cut(s)	251, 1190
ErhI	CCWWGG	2 cut(s)	251, 1190
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	3 cut(s)	416, 854, 1281
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	412, 850, 1277
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	2 cut(s)	507, 1242
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	507, 1242
FspBI	CTAG	2 cut(s)	857, 1046
GluI	GCNGC	2 cut(s)	507, 1242
GsuI	CTGGAG	1 cut(s)	973
HaeIII	GGCC	3 cut(s)	294, 407, 861
HgaI	GACGC	1 cut(s)	682
Hin1II	CATG	3 cut(s)	416, 854, 1281
HinfI	GANTC	3 cut(s)	221, 805, 1132
HphI	GGTGA	2 cut(s)	625, 1208
Hpy166II	GTNNAC	4 cut(s)	633, 886, 914, 1051
Hpy188I	TCNGA	1 cut(s)	1254
Hpy188III	TCNNGA	5 cut(s)	156, 170, 270, 644, 851
Hpy8I	GTNNAC	4 cut(s)	633, 886, 914, 1051
HpyAV	CCTTC	2 cut(s)	116, 524
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	9 cut(s)	319, 329, 506, 816, 914, 1025, 1244, 1272, 1277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 845
HpyF3I	CTNAG	2 cut(s)	1107, 1198
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	3 cut(s)	416, 854, 1281
Kzo9I	GATC	5 cut(s)	360, 399, 725, 906, 1186
Lsp1109I	GCAGC	2 cut(s)	518, 1228
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	2 cut(s)	857, 1046
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	3 cut(s)	449, 740, 1061
MalI	GATC	5 cut(s)	362, 401, 727, 908, 1188
MboI	GATC	5 cut(s)	360, 399, 725, 906, 1186
MboII	GAAGA	6 cut(s)	185, 274, 314, 632, 715, 1172
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	2 cut(s)	725, 906
MhlI	GDGCHC	2 cut(s)	564, 916
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	5 cut(s)	240, 420, 459, 515, 893
MslI	CAYNNNNRTG	2 cut(s)	395, 747
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	1 cut(s)	1274
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	335, 845
NdeII	GATC	5 cut(s)	360, 399, 725, 906, 1186
NlaIII	CATG	3 cut(s)	416, 854, 1281
NlaIV	GGNNCC	1 cut(s)	727
NmeAIII	GCCGAG	1 cut(s)	1100
NmuCI	GTSAC	2 cut(s)	449, 740
NruI	TCGCGA	1 cut(s)	157
PagI	TCATGA	1 cut(s)	850
PctI	GAATGC	1 cut(s)	1274
PfeI	GAWTC	3 cut(s)	221, 805, 1132
PkrI	GCNGC	2 cut(s)	508, 1243
PspEI	GGTNACC	1 cut(s)	1061
PspN4I	GGNNCC	1 cut(s)	727
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	725, 906
RruI	TCGCGA	1 cut(s)	157
RsaI	GTAC	3 cut(s)	50, 887, 1196
RsaNI	GTAC	3 cut(s)	49, 886, 1195
RseI	CAYNNNNRTG	2 cut(s)	395, 747
SaqAI	TTAA	5 cut(s)	240, 420, 459, 515, 893
SatI	GCNGC	2 cut(s)	507, 1242
Sau3AI	GATC	5 cut(s)	360, 399, 725, 906, 1186
Sau96I	GGNCC	1 cut(s)	406
SduI	GDGCHC	2 cut(s)	564, 916
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	2 cut(s)	504, 1154
SmiMI	CAYNNNNRTG	2 cut(s)	395, 747
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SspI	AATATT	1 cut(s)	1183
SspMI	CTAG	2 cut(s)	857, 1046
StyI	CCWWGG	2 cut(s)	251, 1190
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	3 cut(s)	402, 1130, 1135
TatI	WGTACW	2 cut(s)	48, 885
TfiI	GAWTC	3 cut(s)	221, 805, 1132
Tru1I	TTAA	5 cut(s)	240, 420, 459, 515, 893
Tru9I	TTAA	5 cut(s)	240, 420, 459, 515, 893
TscAI	CASTG	3 cut(s)	807, 818, 1279
TseFI	GTSAC	2 cut(s)	449, 740
TseI	GCWGC	2 cut(s)	506, 1241
Tsp45I	GTSAC	2 cut(s)	449, 740
TspDTI	ATGAA	5 cut(s)	315, 324, 672, 971, 1193
TspGWI	ACGGA	3 cut(s)	176, 532, 1271
TspRI	CASTG	3 cut(s)	807, 818, 1279
VneI	GTGCAC	1 cut(s)	912
XapI	RAATTY	3 cut(s)	367, 465, 1165
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	2 cut(s)	857, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.