Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49732552 .. 49735260

Gene Structure 2709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATCGGTTTTATGATATTGATGTACAACTTTGAAACTTATTTGGATTTCCGCCAACATGCTGCTCTGAAACTTCCAACACTTCCTAAAACTTTGGAAGGAGTAATCAGCCAAGAAAAGTTTGAGAAGTCGAGAGCCTACTGTCTTGAAAGAAGCAACTTCCATTTTGTTCATGATTTTGTGACTTACTTATGGACTCAGGAATTTTGTTCTATCGGATTTTGCCTTGGTTTTGGAAGGTTAAAATCAGGAGACTTTGTAGTCTTAGCTGGCCTCAATGCCCAAAATGAAATACTACATACCCTTGCGTTTTTAGCTGGTATGATGATTTGGGAACAGATCACAGACTTACCATTCTCTCTGTACTCCACATTTGTCATCGAGGCTCGTCATGGTTTCAATAACCAAACAATATGGTTGTTCTTGAAAGACATGTTAAAAGAAATTTGTCTTTCTGTTATTATTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTAGAGAAAGGAGGTGCTTACTTGGTCATTTATCTTTGGCCGTTCATGCTTGTCCTCTCTCTTGTGATGATGACGATCTACCCTATTCTAATAGCCCCACTTTTTAACAAGTTCACCCCTCTTCCTGAGGGTCAGCTGAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCGAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGCAATGCCTATATGTATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCAGTGTACAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTGTACTTATTTATTTCTACGCAGATCCGTATGCTTTTACACTTCGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCTAAGTTTTGGGTTTGATACTCAACCAGTAATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCGCTTCGAGCTAGTCTTGTTAGACTACAGGAAGAGAATTTGTCAGCTATGAATACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

425

Amino Acids

48.65

Weight (kDa)

6.74

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 211	2.6e-55	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	214 - 419	2.1e-46	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	4 cut(s)	736, 802, 904, 1184
AcoI	YGGCCR	1 cut(s)	560
AcsI	RAATTY	4 cut(s)	227, 468, 1088, 1168
AdeI	CACNNNGTG	1 cut(s)	886
AfaI	GTAC	6 cut(s)	50, 389, 820, 890, 1053, 1199
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	6 cut(s)	59, 173, 424, 451, 706, 1088
Alw26I	GTCTC	2 cut(s)	270, 1013
AlwI	GGATC	4 cut(s)	736, 802, 904, 1184
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	3 cut(s)	295, 560, 862
ApeKI	GCWGC	2 cut(s)	86, 1244
ApoI	RAATTY	4 cut(s)	227, 468, 1088, 1168
AsuHPI	GGTGA	2 cut(s)	628, 1265
AvaI	CYCGRG	1 cut(s)	692
AxyI	CCTNAGG	1 cut(s)	648
BbvCI	CCTCAGC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	73, 1231
BccI	CCATC	1 cut(s)	719
BceAI	ACGGC	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	270, 1013
BfaI	CTAG	5 cut(s)	848, 860, 1049, 1143, 1229
BfmI	CTRYAG	1 cut(s)	1157
BisI	GCNGC	2 cut(s)	87, 1245
BlsI	GCNGC	2 cut(s)	88, 1246
BmeT110I	CYCGRG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	1090
BpmI	CTGGAG	1 cut(s)	940
Bpu10I	CCTNAGC	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	1013
BsaJI	CCNNGG	2 cut(s)	250, 1193
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	995
Bse21I	CCTNAGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	757
Bse8I	GATNNNNATC	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	250, 1193
BseGI	GGATG	1 cut(s)	1219
BseJI	GATNNNNATC	1 cut(s)	596
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	4 cut(s)	236, 639, 650, 938
BseNI	ACTGG	1 cut(s)	995
BseXI	GCAGC	2 cut(s)	73, 1231
BshFI	GGCC	3 cut(s)	297, 562, 864
BsiHKCI	CYCGRG	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	270, 1013
BsnI	GGCC	3 cut(s)	297, 562, 864
Bso31I	GGTCTC	1 cut(s)	1013
BsoBI	CYCGRG	1 cut(s)	692
Bsp1407I	TGTACA	2 cut(s)	48, 818
Bsp143I	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	3 cut(s)	297, 562, 864
BspCNI	CTCAG	4 cut(s)	235, 640, 651, 939
BspHI	TCATGA	2 cut(s)	196, 853
BspPI	GGATC	4 cut(s)	736, 802, 904, 1184
BspTNI	GGTCTC	1 cut(s)	1013
BsrDI	GCAATG	1 cut(s)	757
BsrGI	TGTACA	2 cut(s)	48, 818
BsrI	ACTGG	1 cut(s)	995
BssECI	CCNNGG	2 cut(s)	250, 1193
BssMI	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
BssT1I	CCWWGG	2 cut(s)	250, 1193
Bst4CI	ACNGT	2 cut(s)	167, 884
Bst6I	CTCTTC	3 cut(s)	648, 1135, 1158
BstAUI	TGTACA	2 cut(s)	48, 818
BstC8I	GCNNGC	3 cut(s)	295, 681, 1063
BstDEI	CTNAG	7 cut(s)	222, 289, 648, 659, 947, 971, 1110
BstF5I	GGATG	1 cut(s)	1219
BstKTI	GATC	6 cut(s)	366, 600, 731, 810, 912, 1192
BstMAI	GTCTC	2 cut(s)	270, 1013
BstMBI	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 568, 848
BstNSI	RCATGY	2 cut(s)	86, 460
BstSFI	CTRYAG	1 cut(s)	1157
BstV1I	GCAGC	2 cut(s)	73, 1231
BstX2I	RGATCY	2 cut(s)	728, 909
BstYI	RGATCY	2 cut(s)	728, 909
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	297, 562, 864
BtsCI	GGATG	1 cut(s)	1219
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	3 cut(s)	803, 821, 889
Cac8I	GCNNGC	3 cut(s)	295, 681, 1063
CciI	TCATGA	2 cut(s)	196, 853
Csp6I	GTAC	6 cut(s)	49, 388, 819, 889, 1052, 1198
CviAII	CATG	6 cut(s)	83, 197, 416, 457, 568, 854
CviQI	GTAC	6 cut(s)	49, 388, 819, 889, 1052, 1198
DdeI	CTNAG	7 cut(s)	222, 289, 648, 659, 947, 971, 1110
DpnI	GATC	6 cut(s)	365, 599, 730, 809, 911, 1191
DpnII	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
DraIII	CACNNNGTG	1 cut(s)	886
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	560
Eam1104I	CTCTTC	3 cut(s)	648, 1135, 1158
EarI	CTCTTC	3 cut(s)	648, 1135, 1158
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	250, 1193
Eco31I	GGTCTC	1 cut(s)	1013
Eco81I	CCTNAGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	250, 1193
ErhI	CCWWGG	2 cut(s)	250, 1193
FaeI	CATG	6 cut(s)	86, 200, 419, 460, 571, 857
FatI	CATG	6 cut(s)	82, 196, 415, 456, 567, 853
Fnu4HI	GCNGC	2 cut(s)	87, 1245
FokI	GGATG	1 cut(s)	1206
Fsp4HI	GCNGC	2 cut(s)	87, 1245
FspBI	CTAG	5 cut(s)	848, 860, 1049, 1143, 1229
GluI	GCNGC	2 cut(s)	87, 1245
GsuI	CTGGAG	1 cut(s)	940
HaeIII	GGCC	3 cut(s)	297, 562, 864
Hin1II	CATG	6 cut(s)	86, 200, 419, 460, 571, 857
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	2 cut(s)	628, 1265
Hpy166II	GTNNAC	4 cut(s)	636, 819, 889, 1054
Hpy188I	TCNGA	2 cut(s)	93, 242
Hpy188III	TCNNGA	9 cut(s)	156, 170, 197, 224, 273, 448, 647, 854, 946
Hpy8I	GTNNAC	4 cut(s)	636, 819, 889, 1054
HpyAV	CCTTC	2 cut(s)	116, 255
HpyCH4III	ACNGT	2 cut(s)	167, 884
HpyCH4V	TGCA	2 cut(s)	509, 1247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 568, 848
HpyF3I	CTNAG	7 cut(s)	222, 289, 648, 659, 947, 971, 1110
Hsp92II	CATG	6 cut(s)	86, 200, 419, 460, 571, 857
Kzo9I	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
Lsp1109I	GCAGC	2 cut(s)	73, 1231
LweI	GCATC	1 cut(s)	1090
MaeI	CTAG	5 cut(s)	848, 860, 1049, 1143, 1229
MaeIII	GTNAC	2 cut(s)	205, 743
MalI	GATC	6 cut(s)	365, 599, 730, 809, 911, 1191
MboI	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
MboII	GAAGA	5 cut(s)	635, 678, 718, 1122, 1175
MfeI	CAATTG	1 cut(s)	1248
MflI	RGATCY	2 cut(s)	728, 909
MluCI	AATT	8 cut(s)	227, 468, 519, 669, 834, 1088, 1168, 1248
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	5 cut(s)	266, 461, 627, 774, 876
MslI	CAYNNNNRTG	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	658
MunI	CAATTG	1 cut(s)	1248
MwoI	GCNNNNNNNGC	3 cut(s)	338, 568, 848
NdeII	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
NlaIII	CATG	6 cut(s)	86, 200, 419, 460, 571, 857
NmeAIII	GCCGAG	2 cut(s)	1103, 1181
NmuCI	GTSAC	2 cut(s)	205, 743
NspI	RCATGY	2 cut(s)	86, 460
PaeR7I	CTCGAG	1 cut(s)	692
PagI	TCATGA	2 cut(s)	196, 853
PciI	ACATGT	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	88, 1246
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	456
PspXI	VCTCGAGB	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	728, 909
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	6 cut(s)	50, 389, 820, 890, 1053, 1199
RsaNI	GTAC	6 cut(s)	49, 388, 819, 889, 1052, 1198
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	5 cut(s)	266, 461, 627, 774, 876
SatI	GCNGC	2 cut(s)	87, 1245
Sau3AI	GATC	6 cut(s)	363, 597, 728, 807, 909, 1189
SchI	GAGTC	1 cut(s)	214
SfaNI	GCATC	1 cut(s)	1090
SfcI	CTRYAG	1 cut(s)	1157
Sfr274I	CTCGAG	1 cut(s)	692
SlaI	CTCGAG	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	8 cut(s)	227, 468, 519, 669, 834, 1088, 1168, 1248
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	5 cut(s)	848, 860, 1049, 1143, 1229
StyI	CCWWGG	2 cut(s)	250, 1193
TaaI	ACNGT	2 cut(s)	167, 884
TaqI	TCGA	5 cut(s)	155, 405, 693, 1138, 1233
TasI	AATT	8 cut(s)	227, 468, 519, 669, 834, 1088, 1168, 1248
TatI	WGTACW	5 cut(s)	48, 387, 818, 888, 1051
Tru1I	TTAA	5 cut(s)	266, 461, 627, 774, 876
Tru9I	TTAA	5 cut(s)	266, 461, 627, 774, 876
TscAI	CASTG	3 cut(s)	810, 821, 889
TseFI	GTSAC	2 cut(s)	205, 743
TseI	GCWGC	2 cut(s)	86, 1244
Tsp45I	GTSAC	2 cut(s)	205, 743
TspDTI	ATGAA	4 cut(s)	185, 327, 556, 1196
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	3 cut(s)	810, 821, 889
XapI	RAATTY	4 cut(s)	227, 468, 1088, 1168
XceI	RCATGY	2 cut(s)	86, 460
XhoI	CTCGAG	1 cut(s)	692
XspI	CTAG	5 cut(s)	848, 860, 1049, 1143, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.