Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

47752669 .. 47757789

Gene Structure 5121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCAGGCAAGATGATCAACAGACCGTTGCTACTGACTTATTTTTACCTACTGATCTATGTTCTGCTTTCATCTGGAGTTATATTGTACAACAAGTGGGTTCTGTCTCCGAAATACTTCAATTTTCCATTGCCCATAACACTTACGATGATTCATATGGGGTTTTCTGGATTGGTAGCATTTTTTCTCGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTCGAAATATATGCAACATGTGTAATACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACCGCTTACTTGCATATTTCTGTGGCTTTCATCCAAATGCTCAAAGCTCTAATGCCGGTGGCTACTTTTATCATGGCTGTTTTATGTGGCATTGATAAACCAAGGTGCGACGTGTTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCGTTTCCTCATACGGGGAGATTCATTTTAATGTAGTTGGTACACTTTACCAGGTTACGGGCATCTTTGCAGAAGCCCTTAGGCTGGTCTTAACACAAGTCCTTTTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACTATATAGCTCCATGCAGTTTTGTATTCCTGTCTGTGCCTTGGTTATTACTTGAGAAGCCTGCAATGGAAGTTTCACAAATTCAGTTCAACTTCTGGATCTTTTTCTCCAATGCTCTATGTGCTTTGGCTTTGAACTTTTCCATATTCTTAGTAATTGGTAGAACTGGAGCAGTTACCATTCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCGATCATAACCAGGCTGAACATAATTGGTTATGCAATAGCATTGTGTGGTGTTGTCATGTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCAGACAGAATCTCGAAGGATTGGAAGTTGGAGAAAAAGTCTTCTGATATCTTTGTGCCCAATAATGGAGGGGGTTTATCCTCTGATATGAATGTGGACGAAGAAACACCCCTAACTCAATCATCAAGGTTGTCTCACGTGGGACGCTCGTCGAGTGGCAATCATGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

377

Amino Acids

41.78

Weight (kDa)

9.21

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	15 - 301	4.6e-23	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	698
AcsI	RAATTY	1 cut(s)	672
AcvI	CACGTG	1 cut(s)	1099
AfaI	GTAC	3 cut(s)	89, 487, 899
AfiI	CCNNNNNNNGG	4 cut(s)	459, 502, 529, 1025
AflIII	ACRYGT	3 cut(s)	245, 408, 420
AgsI	TTSAA	6 cut(s)	121, 202, 279, 682, 727, 819
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	495, 848
AluBI	AGCT	5 cut(s)	212, 344, 588, 602, 943
AluI	AGCT	5 cut(s)	212, 344, 588, 602, 943
Alw26I	GTCTC	2 cut(s)	111, 1098
AlwI	GGATC	1 cut(s)	698
ApeKI	GCWGC	1 cut(s)	943
ApoI	RAATTY	1 cut(s)	672
Asp700I	GAANNNNTTC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	574
AsuII	TTCGAA	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	1020
BbrPI	CACGTG	1 cut(s)	1099
BbsI	GAAGAC	1 cut(s)	993
BbvI	GCAGC	1 cut(s)	930
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	2 cut(s)	497, 850
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	111, 1098
BisI	GCNGC	1 cut(s)	944
BlsI	GCNGC	1 cut(s)	945
Bme1390I	CCNGG	2 cut(s)	497, 850
BmgBI	CACGTC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	497, 850
BmsI	GCATC	3 cut(s)	516, 938, 944
BoxI	GACNNNNGTC	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	993
BpmI	CTGGAG	2 cut(s)	96, 780
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	665
BsaAI	YACGTR	1 cut(s)	1099
BsaJI	CCNNGG	2 cut(s)	398, 632
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 983, 1013
Bsc4I	CCNNNNNNNGG	4 cut(s)	459, 502, 529, 1025
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	763, 803
Bse21I	CCTNAGG	1 cut(s)	524
Bse3DI	GCAATG	2 cut(s)	128, 663
BseBI	CCWGG	2 cut(s)	497, 850
BseDI	CCNNGG	2 cut(s)	398, 632
BseGI	GGATG	2 cut(s)	327, 925
BseLI	CCNNNNNNNGG	4 cut(s)	459, 502, 529, 1025
BseMI	GCAATG	2 cut(s)	128, 663
BseMII	CTCAG	1 cut(s)	953
BseNI	ACTGG	2 cut(s)	763, 803
BseSI	GKGCMC	1 cut(s)	1020
BseXI	GCAGC	1 cut(s)	930
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	1116
BslI	CCNNNNNNNGG	4 cut(s)	459, 502, 529, 1025
BsmAI	GTCTC	2 cut(s)	111, 1098
BsmFI	GGGAC	1 cut(s)	1116
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	1020
Bsp1407I	TGTACA	2 cut(s)	87, 897
Bsp143I	GATC	4 cut(s)	15, 54, 690, 840
BspACI	CCGC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	952
BspPI	GGATC	1 cut(s)	698
BspT104I	TTCGAA	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	128, 663
BsrFI	RCCGGY	1 cut(s)	352
BsrGI	TGTACA	2 cut(s)	87, 897
BsrI	ACTGG	2 cut(s)	763, 803
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	398, 632
BssMI	GATC	4 cut(s)	15, 54, 690, 840
BssT1I	CCWWGG	2 cut(s)	398, 632
Bst2UI	CCWGG	2 cut(s)	497, 850
Bst4CI	ACNGT	2 cut(s)	27, 823
BstAUI	TGTACA	2 cut(s)	87, 897
BstBAI	YACGTR	1 cut(s)	1099
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	654, 927
BstDEI	CTNAG	3 cut(s)	524, 742, 939
BstF5I	GGATG	2 cut(s)	327, 925
BstKTI	GATC	4 cut(s)	18, 57, 693, 843
BstMAI	GTCTC	2 cut(s)	111, 1098
BstMBI	GATC	4 cut(s)	15, 54, 690, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 713
BstNI	CCWGG	2 cut(s)	497, 850
BstNSI	RCATGY	2 cut(s)	249, 424
BstPAI	GACNNNNGTC	1 cut(s)	1108
BstSCI	CCNGG	2 cut(s)	495, 848
BstSLI	GKGCMC	1 cut(s)	1020
BstV1I	GCAGC	1 cut(s)	930
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	524
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	327, 925
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	654, 927
Cfr10I	RCCGGY	1 cut(s)	352
CseI	GACGC	1 cut(s)	1113
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	88, 486, 898
CviAII	CATG	7 cut(s)	246, 370, 421, 606, 895, 1124, 1131
CviQI	GTAC	3 cut(s)	88, 486, 898
DdeI	CTNAG	3 cut(s)	524, 742, 939
DpnI	GATC	4 cut(s)	17, 56, 692, 842
DpnII	GATC	4 cut(s)	15, 54, 690, 840
DraI	TTTAAA	2 cut(s)	573, 792
Eco130I	CCWWGG	2 cut(s)	398, 632
Eco32I	GATATC	1 cut(s)	1009
Eco72I	CACGTG	1 cut(s)	1099
Eco81I	CCTNAGG	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	495, 848
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	2 cut(s)	398, 632
ErhI	CCWWGG	2 cut(s)	398, 632
FaeI	CATG	7 cut(s)	249, 373, 424, 609, 898, 1127, 1134
FaqI	GGGAC	1 cut(s)	1116
FatI	CATG	7 cut(s)	245, 369, 420, 605, 894, 1123, 1130
FauNDI	CATATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	944
FokI	GGATG	2 cut(s)	314, 932
Fsp4HI	GCNGC	1 cut(s)	944
GluI	GCNGC	1 cut(s)	944
GsuI	CTGGAG	2 cut(s)	96, 780
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	1113
Hin1II	CATG	7 cut(s)	249, 373, 424, 609, 898, 1127, 1134
HinfI	GANTC	4 cut(s)	151, 466, 836, 969
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	2 cut(s)	488, 1057
Hpy188I	TCNGA	3 cut(s)	111, 1006, 1045
Hpy188III	TCNNGA	6 cut(s)	75, 168, 688, 833, 962, 973
Hpy8I	GTNNAC	2 cut(s)	488, 1057
Hpy99I	CGWCG	2 cut(s)	410, 1114
HpyAV	CCTTC	3 cut(s)	277, 553, 970
HpyCH4III	ACNGT	2 cut(s)	27, 823
HpyCH4IV	ACGT	2 cut(s)	408, 1098
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 713
HpyF3I	CTNAG	3 cut(s)	524, 742, 939
HpySE526I	ACGT	2 cut(s)	408, 1098
Hsp92II	CATG	7 cut(s)	249, 373, 424, 609, 898, 1127, 1134
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	15, 54, 690, 840
LmnI	GCTCC	3 cut(s)	217, 607, 761
Lsp1109I	GCAGC	1 cut(s)	930
LweI	GCATC	3 cut(s)	516, 938, 944
MabI	ACCWGGT	1 cut(s)	495
MaeII	ACGT	2 cut(s)	408, 1098
MaeIII	GTNAC	2 cut(s)	499, 766
MalI	GATC	4 cut(s)	17, 56, 692, 842
MboI	GATC	4 cut(s)	15, 54, 690, 840
MboII	GAAGA	3 cut(s)	568, 993, 1073
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	1020
MluCI	AATT	4 cut(s)	121, 672, 747, 861
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	2 cut(s)	418, 969
MnlI	CCTC	3 cut(s)	463, 1022, 1051
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	5 cut(s)	474, 536, 572, 791, 915
MslI	CAYNNNNRTG	2 cut(s)	332, 474
MspA1I	CMGCKG	1 cut(s)	943
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	497, 850
MvaI	CCWGG	2 cut(s)	497, 850
MwoI	GCNNNNNNNGC	2 cut(s)	272, 713
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	4 cut(s)	15, 54, 690, 840
NlaIII	CATG	7 cut(s)	249, 373, 424, 609, 898, 1127, 1134
NspI	RCATGY	2 cut(s)	249, 424
NspV	TTCGAA	1 cut(s)	231
PciI	ACATGT	2 cut(s)	245, 420
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	151, 466, 969
PkrI	GCNGC	1 cut(s)	945
PleI	GAGTC	1 cut(s)	844
PmaCI	CACGTG	1 cut(s)	1099
PmlI	CACGTG	1 cut(s)	1099
PpsI	GAGTC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	1099
PscI	ACATGT	2 cut(s)	245, 420
PshAI	GACNNNNGTC	1 cut(s)	1108
Psp6I	CCWGG	2 cut(s)	495, 848
PspCI	CACGTG	1 cut(s)	1099
PspGI	CCWGG	2 cut(s)	495, 848
PsuI	RGATCY	1 cut(s)	690
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	3 cut(s)	89, 487, 899
RsaNI	GTAC	3 cut(s)	88, 486, 898
RseI	CAYNNNNRTG	2 cut(s)	332, 474
SaqAI	TTAA	5 cut(s)	474, 536, 572, 791, 915
SatI	GCNGC	1 cut(s)	944
Sau3AI	GATC	4 cut(s)	15, 54, 690, 840
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	497, 850
SduI	GDGCHC	1 cut(s)	1020
SexAI	ACCWGGT	1 cut(s)	495
SfaNI	GCATC	3 cut(s)	516, 938, 944
SfuI	TTCGAA	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	332, 474
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	4 cut(s)	121, 672, 747, 861
SsiI	CCGC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	495, 848
StyI	CCWWGG	2 cut(s)	398, 632
TaaI	ACNGT	2 cut(s)	27, 823
TaiI	ACGT	2 cut(s)	411, 1101
TaqI	TCGA	5 cut(s)	231, 775, 839, 974, 1112
TasI	AATT	4 cut(s)	121, 672, 747, 861
TatI	WGTACW	2 cut(s)	87, 897
TfiI	GAWTC	3 cut(s)	151, 466, 969
Tru1I	TTAA	5 cut(s)	474, 536, 572, 791, 915
Tru9I	TTAA	5 cut(s)	474, 536, 572, 791, 915
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	943
TspDTI	ATGAA	5 cut(s)	60, 143, 316, 458, 1064
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	672
XceI	RCATGY	2 cut(s)	249, 424
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.