Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

30431634 .. 30435314

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCATCATCGTCATCATCATCGAGTGCGTCAACACCTCCATACCCAAGCGCTGCTAGAATCTCTGATTCTCAATGTTATCAGCAGTACACTGCCTCTCTCAAATGTCTAGAAAAATATCACTCAGACAAGAGCAAATGTCAAGAACATTTTGATATTTATAAAGAATGCAAGAAAAAGGAGAGAGAAGCTCGATTGGAGCGAAACAAGAGTAGGTCTCTTTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

76

Amino Acids

8.71

Weight (kDa)

9.14

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHCH	PF06747	26 - 60	6.9e-08	CHCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AfaI	GTAC	1 cut(s)	89
AfeI	AGCGCT	1 cut(s)	52
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	222
Aor51HI	AGCGCT	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	57, 110
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	14
BplI	GAGNNNNNCTC	3 cut(s)	175, 207, 202
BsaI	GGTCTC	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	53
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	1 cut(s)	191
CviKI_1	RGCY	1 cut(s)	191
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	222
Eco47III	AGCGCT	1 cut(s)	52
FaiI	YATR	2 cut(s)	43, 162
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	57, 110
FspEI	CC	8 cut(s)	51, 54, 59, 60, 109, 164, 182, 199
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	54
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	60, 68
Hpy166II	GTNNAC	2 cut(s)	33, 90
Hpy188I	TCNGA	2 cut(s)	67, 127
Hpy188III	TCNNGA	3 cut(s)	110, 143, 228
Hpy8I	GTNNAC	2 cut(s)	33, 90
HpyCH4V	TGCA	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	57, 110
MnlI	CCTC	2 cut(s)	48, 106
Mva1269I	GAATGC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	60, 68
PkrI	GCNGC	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	162
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	54
SetI	ASST	3 cut(s)	40, 193, 218
SfaNI	GCATC	1 cut(s)	14
SgeI	CNNG	9 cut(s)	36, 60, 69, 122, 142, 155, 184, 204, 220
SspMI	CTAG	2 cut(s)	57, 110
TaqI	TCGA	2 cut(s)	23, 193
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	60, 68
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	97
XbaI	TCTAGA	1 cut(s)	109
XspI	CTAG	2 cut(s)	57, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.