Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004075.1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

38371 .. 40979

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004075.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgcttgtcctctcttttgtgatgatgacgatctaccctattctaatagccccactttttaacaagttcacccctcttcctgagggtcagctgagggagaaaattgagcagctcgcttcttccctcaagtttccattgaagaagttgtttgttgttgatggatctataaggtcaagtcacagcaatgcctatatgtatggattttttaagaacaagaggattgtcctttatgatacactgatccagcagtgtacaaatgatgaggaaattgtagctgttctagcgcatgagctaggccattggaagcttaatcacactgtgtacttatttatttctacgcagcataccataacacctatccagcacctagtacactttgctctcaaccttgtgagccgagcttttgaatttcaggctgatgcttttgctaagaaacttggttatgcctcttcgcttcgagctagtcttgttagactacaggaagagaatttgtcagctatgaatactgatccttggtactcggcatatcactattctcatccccctctagtcgaaaggttggctgcaattggtgaaacagacaagaaagcagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

198

Amino Acids

22.64

Weight (kDa)

7.88

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	169, 235, 503
AcsI	RAATTY	2 cut(s)	407, 487
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	4 cut(s)	253, 323, 372, 518
AgsI	TTSAA	2 cut(s)	139, 407
AluBI	AGCT	8 cut(s)	91, 112, 275, 292, 307, 401, 461, 497
AluI	AGCT	8 cut(s)	91, 112, 275, 292, 307, 401, 461, 497
AlwI	GGATC	3 cut(s)	169, 235, 503
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	109, 340, 563
ApoI	RAATTY	2 cut(s)	407, 487
AspLEI	GCGC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	61, 584
AxyI	CCTNAGG	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	121, 352, 550
BccI	CCATC	1 cut(s)	152
BfaI	CTAG	5 cut(s)	281, 293, 368, 462, 548
BfmI	CTRYAG	1 cut(s)	476
BisI	GCNGC	3 cut(s)	110, 341, 564
BlsI	GCNGC	3 cut(s)	111, 342, 565
BmsI	GCATC	1 cut(s)	409
Bpu10I	CCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	512
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	538
BseJI	GATNNNNATC	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	72, 83
BseXI	GCAGC	3 cut(s)	121, 352, 550
BshFI	GGCC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	4 cut(s)	30, 161, 240, 508
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	73, 84
BspPI	GGATC	3 cut(s)	169, 235, 503
BsrDI	GCAATG	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	4 cut(s)	30, 161, 240, 508
BssT1I	CCWWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	3 cut(s)	81, 454, 477
BstAUI	TGTACA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	3 cut(s)	81, 92, 429
BstF5I	GGATG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	4 cut(s)	33, 164, 243, 511
BstMBI	GATC	4 cut(s)	30, 161, 240, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	121, 352, 550
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	3 cut(s)	236, 254, 315
Cac8I	GCNNGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	286
Csp6I	GTAC	4 cut(s)	252, 322, 371, 517
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	4 cut(s)	252, 322, 371, 517
DdeI	CTNAG	3 cut(s)	81, 92, 429
DpnI	GATC	4 cut(s)	32, 163, 242, 510
DpnII	GATC	4 cut(s)	30, 161, 240, 508
DraIII	CACNNNGTG	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	81, 454, 477
EarI	CTCTTC	3 cut(s)	81, 454, 477
Eco130I	CCWWGG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	1 cut(s)	290
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	110, 341, 564
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	3 cut(s)	110, 341, 564
FspBI	CTAG	5 cut(s)	281, 293, 368, 462, 548
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	110, 341, 564
HaeIII	GGCC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	305
HphI	GGTGA	2 cut(s)	61, 584
Hpy166II	GTNNAC	4 cut(s)	69, 252, 322, 373
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	4 cut(s)	69, 252, 322, 373
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	81, 92, 429
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	30, 161, 240, 508
LpnPI	CCDG	5 cut(s)	93, 257, 374, 398, 464
Lsp1109I	GCAGC	3 cut(s)	121, 352, 550
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	5 cut(s)	281, 293, 368, 462, 548
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	4 cut(s)	32, 163, 242, 510
MboI	GATC	4 cut(s)	30, 161, 240, 508
MboII	GAAGA	5 cut(s)	68, 111, 151, 441, 494
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	161
MluCI	AATT	5 cut(s)	102, 267, 407, 487, 567
MnlI	CCTC	9 cut(s)	20, 76, 84, 87, 134, 210, 256, 457, 555
MseI	TTAA	3 cut(s)	60, 207, 309
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	4 cut(s)	30, 161, 240, 508
NlaIII	CATG	1 cut(s)	290
NmeAIII	GCCGAG	2 cut(s)	422, 500
NmuCI	GTSAC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	111, 342, 565
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	4 cut(s)	253, 323, 372, 518
RsaNI	GTAC	4 cut(s)	252, 322, 371, 517
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	60, 207, 309
SatI	GCNGC	3 cut(s)	110, 341, 564
Sau3AI	GATC	4 cut(s)	30, 161, 240, 508
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	102, 267, 407, 487, 567
SspMI	CTAG	5 cut(s)	281, 293, 368, 462, 548
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	457, 552
TasI	AATT	5 cut(s)	102, 267, 407, 487, 567
TatI	WGTACW	3 cut(s)	251, 321, 370
Tru1I	TTAA	3 cut(s)	60, 207, 309
Tru9I	TTAA	3 cut(s)	60, 207, 309
TscAI	CASTG	3 cut(s)	243, 254, 322
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	109, 340, 563
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	243, 254, 322
XapI	RAATTY	2 cut(s)	407, 487
XspI	CTAG	5 cut(s)	281, 293, 368, 462, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.