Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017004.1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2002

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017004.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

aaaggagatgcttacttggtcatttacctttgggcgttcatgcttgtcctctctcttgtgatgatgacgatctatcctattctaatagccccactttttaataagttcacccctcttcctgagggtcagctgagggagaaaattgagaagctcgcttcttccctcaagtttccattgaagaagttgtttgttgttgatggatctataaggtcaagtcacagcaatgcctatatgtatggattttttaagaacaagaggattgtcctttatgatacactgatccagcagtgtacaaatgatgaggaaattgtagctgttctagcgcatgagctaggccattggaagcttaatcacagtgtgtacttatttatttctacgcagatccgtatgcttttacacttcgggggatatgctctcctgagaaactccagcagtctgtttctaagttttgggtttgatactcaaccagtaatcattggtctcatcatatttcagcataccataacacctatccagcacctagtacactttgctcgcaaccttgtgagccgagcttttgaatttcaggctgatgcttttgctaagaaacttggttatgcctcttcgcttcgagctagtcttgttagactacaggaagagaatttgtcagctatgagtactgatccttggtactcggcatatcactattctcatccccctctagtcgaaaggttggctgcaattggtgaaacagacaagaaagcagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

249

Amino Acids

28.42

Weight (kDa)

9.03

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	208, 274, 376, 656
AcsI	RAATTY	2 cut(s)	560, 640
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	5 cut(s)	292, 362, 525, 658, 671
AgsI	TTSAA	2 cut(s)	178, 560
AluBI	AGCT	8 cut(s)	130, 151, 314, 331, 346, 554, 614, 650
AluI	AGCT	8 cut(s)	130, 151, 314, 331, 346, 554, 614, 650
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	4 cut(s)	208, 274, 376, 656
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	2 cut(s)	560, 640
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	100, 737
AxyI	CCTNAGG	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	5 cut(s)	320, 332, 521, 615, 701
BfmI	CTRYAG	1 cut(s)	629
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
BmcAI	AGTACT	1 cut(s)	658
BmsI	GCATC	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	467
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	1 cut(s)	691
BseJI	GATNNNNATC	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	111, 122, 410
BseNI	ACTGG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	703
BshFI	GGCC	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	485
Bsp1407I	TGTACA	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	69, 200, 279, 381, 661
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	3 cut(s)	112, 123, 411
BspPI	GGATC	4 cut(s)	208, 274, 376, 656
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	665
BssMI	GATC	5 cut(s)	69, 200, 279, 381, 661
BssT1I	CCWWGG	1 cut(s)	665
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	3 cut(s)	120, 607, 630
BstAUI	TGTACA	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	153, 535
BstDEI	CTNAG	5 cut(s)	120, 131, 419, 443, 582
BstF5I	GGATG	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	5 cut(s)	72, 203, 282, 384, 664
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	5 cut(s)	69, 200, 279, 381, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	703
BstX2I	RGATCY	2 cut(s)	200, 381
BstYI	RGATCY	2 cut(s)	200, 381
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	275, 293, 361
Cac8I	GCNNGC	2 cut(s)	153, 535
CfoI	GCGC	1 cut(s)	325
Csp6I	GTAC	5 cut(s)	291, 361, 524, 657, 670
CviAII	CATG	2 cut(s)	40, 326
CviQI	GTAC	5 cut(s)	291, 361, 524, 657, 670
DdeI	CTNAG	5 cut(s)	120, 131, 419, 443, 582
DpnI	GATC	5 cut(s)	71, 202, 281, 383, 663
DpnII	GATC	5 cut(s)	69, 200, 279, 381, 661
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	120, 607, 630
EarI	CTCTTC	3 cut(s)	120, 607, 630
Eco130I	CCWWGG	1 cut(s)	665
Eco31I	GGTCTC	1 cut(s)	485
Eco81I	CCTNAGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	2 cut(s)	43, 329
FatI	CATG	2 cut(s)	39, 325
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	1 cut(s)	678
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	5 cut(s)	320, 332, 521, 615, 701
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	43, 329
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	344
HphI	GGTGA	2 cut(s)	100, 737
Hpy166II	GTNNAC	4 cut(s)	108, 291, 361, 526
Hpy188III	TCNNGA	2 cut(s)	119, 418
Hpy8I	GTNNAC	4 cut(s)	108, 291, 361, 526
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	5 cut(s)	120, 131, 419, 443, 582
Hsp92II	CATG	2 cut(s)	43, 329
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	5 cut(s)	69, 200, 279, 381, 661
LpnPI	CCDG	8 cut(s)	132, 296, 431, 442, 480, 527, 551, 617
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	5 cut(s)	320, 332, 521, 615, 701
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	5 cut(s)	71, 202, 281, 383, 663
MboI	GATC	5 cut(s)	69, 200, 279, 381, 661
MboII	GAAGA	5 cut(s)	107, 150, 190, 594, 647
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	2 cut(s)	200, 381
MluCI	AATT	5 cut(s)	141, 306, 560, 640, 720
MnlI	CCTC	9 cut(s)	59, 115, 123, 126, 173, 249, 295, 610, 708
MseI	TTAA	3 cut(s)	99, 246, 348
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	5 cut(s)	69, 200, 279, 381, 661
NlaIII	CATG	2 cut(s)	43, 329
NmeAIII	GCCGAG	2 cut(s)	575, 653
NmuCI	GTSAC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	718
PsuI	RGATCY	2 cut(s)	200, 381
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	5 cut(s)	292, 362, 525, 658, 671
RsaNI	GTAC	5 cut(s)	291, 361, 524, 657, 670
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	99, 246, 348
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	5 cut(s)	69, 200, 279, 381, 661
ScaI	AGTACT	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	141, 306, 560, 640, 720
SspMI	CTAG	5 cut(s)	320, 332, 521, 615, 701
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	610, 705
TasI	AATT	5 cut(s)	141, 306, 560, 640, 720
TatI	WGTACW	4 cut(s)	290, 360, 523, 656
Tru1I	TTAA	3 cut(s)	99, 246, 348
Tru9I	TTAA	3 cut(s)	99, 246, 348
TscAI	CASTG	3 cut(s)	282, 293, 361
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	3 cut(s)	282, 293, 361
XapI	RAATTY	2 cut(s)	560, 640
XspI	CTAG	5 cut(s)	320, 332, 521, 615, 701
ZrmI	AGTACT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.