Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49699492 .. 49700218

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGTTCCCATTCTTGGAAGTAGTTGTTGGTTCTATGATATTGATGTACATATTTGAAACTTACTTGGATTTGAGGCAACATTCAGCACTCAAACTTCCAACACTTCCTAAAACTTTGGAAGGAGTAATCAGCCAAGAGAAGTTTGAGAAGTCGCGAGCCTACCGTCTTGAAAGAAGCCACTTCCGTTTTCTTTGTCAGTTAGTGAGAATACTTGTGGAATCAGCAATTTTGTTCTTTAAGGTTTTGCCTTGGTTTTGGAAGAAATCAGGACACTTCGTAGATTTAGTTGGCCTCAACGAAGAAAATGAAATACTACATACCCTTGCATTTTTAGCTGGTGTGATGATTTGGTTAGAGGTAGGCATATTATTGCTAATAGCTTATAAGTTTCTGAGAATTGATGAACAATTAAATTGGTATTTGAATTACAATGATTTTCTAGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

150

Amino Acids

17.83

Weight (kDa)

6.42

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 136	2.7e-18	CAAX prenyl protease N-terminal, five membrane helices

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccII	CGCG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	59, 173, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	2 cut(s)	338, 383
AluI	AGCT	2 cut(s)	338, 383
AoxI	GGCC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	445
Bsp68I	TCGCGA	1 cut(s)	157
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	448
BtuMI	TCGCGA	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	6 cut(s)	135, 161, 180, 294, 338, 383
CviKI_1	RGCY	6 cut(s)	135, 161, 180, 294, 338, 383
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaiI	YATR	5 cut(s)	38, 53, 321, 368, 387
FspBI	CTAG	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	4 cut(s)	156, 170, 270, 443
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	395
Kzo9I	GATC	1 cut(s)	445
LpnPI	CCDG	2 cut(s)	255, 324
MaeI	CTAG	1 cut(s)	443
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	2 cut(s)	274, 314
MluCI	AATT	5 cut(s)	228, 399, 410, 415, 427
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	69, 305, 352
MseI	TTAA	2 cut(s)	240, 413
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	1 cut(s)	445
NruI	TCGCGA	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	387
RruI	TCGCGA	1 cut(s)	157
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	240, 413
Sau3AI	GATC	1 cut(s)	445
SetI	ASST	4 cut(s)	246, 340, 363, 385
Sse9I	AATT	5 cut(s)	228, 399, 410, 415, 427
SspMI	CTAG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	448
TasI	AATT	5 cut(s)	228, 399, 410, 415, 427
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	240, 413
Tru9I	TTAA	2 cut(s)	240, 413
TspDTI	ATGAA	2 cut(s)	324, 420
TspGWI	ACGGA	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	442
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.