Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

18866492 .. 18868451

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGTTCCCATTCTTAAAAGCAGTTATTGGTTTTAAAATATTAAAGTACATCTTTGAAACTTATTTGGATTTGCGGCAACACTCGGCTCTCAAGCTTCCAACACTTCCTAAAGCTCTGGAAGGAGTAATAAGTCGAGAAAAGTTTGAGAAGTCACGAGCCTACCGTCTTGAGAAAAGAAATCTTATCACGGTGACATCTTGGCAAGGCCGGAATGTGGCTTCCCGTAAGCTCTTGGCGGCTTCCTCGCTACCACGGGGGGGTAGCTTGAGTATTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

94

Amino Acids

10.66

Weight (kDa)

10.44

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	76, 239
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	217, 260
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	4 cut(s)	97, 116, 232, 267
AluI	AGCT	4 cut(s)	97, 116, 232, 267
AoxI	GGCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	205
BauI	CACGAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	77, 240
BlsI	GCNGC	2 cut(s)	78, 241
BpuEI	CTTGAG	2 cut(s)	77, 191
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 260
BseDI	CCNNGG	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	217, 260
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	217, 260
BsnI	GGCC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	76, 239
BspANI	GGCC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	254
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	167, 193
BstDSI	CCRYGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	9 cut(s)	89, 97, 116, 161, 210, 221, 232, 242, 267
CviKI_1	RGCY	9 cut(s)	89, 97, 116, 161, 210, 221, 232, 242, 267
CviQI	GTAC	1 cut(s)	49
DraI	TTTAAA	1 cut(s)	37
FaiI	YATR	1 cut(s)	283
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
Fnu4HI	GCNGC	2 cut(s)	77, 240
Fsp4HI	GCNGC	2 cut(s)	77, 240
GluI	GCNGC	2 cut(s)	77, 240
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	95
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	205
Hpy188III	TCNNGA	4 cut(s)	119, 137, 156, 170
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	167, 193
LpnPI	CCDG	2 cut(s)	104, 224
MaeIII	GTNAC	2 cut(s)	153, 193
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	256, 271
MseI	TTAA	3 cut(s)	17, 36, 44
MspI	CCGG	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	153, 193
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	78, 241
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	17, 36, 44
SatI	GCNGC	2 cut(s)	77, 240
SetI	ASST	5 cut(s)	99, 118, 234, 269, 282
SmlI	CTYRAG	3 cut(s)	92, 170, 268
SmoI	CTYRAG	3 cut(s)	92, 170, 268
SsiI	CCGC	2 cut(s)	76, 239
SspI	AATATT	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	167, 193
TaqI	TCGA	1 cut(s)	136
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	79, 242
Tru1I	TTAA	3 cut(s)	17, 36, 44
Tru9I	TTAA	3 cut(s)	17, 36, 44
TseFI	GTSAC	2 cut(s)	153, 193
Tsp45I	GTSAC	2 cut(s)	153, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.