Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006798.1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

75699 .. 77709

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006798.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggcgttcccattcttggaagctgttatcggttttatgatattgatgtacaactttgaaacttatttggatttccgccaacatgctgctctgaaacttccaacacttcctaaaactttggaaggagtaatcagcgaagaaaagtttaagaagtcgagagcctactgtcttgaaagaagcaacttccattttgttcatgattttgtgaccttacttatggactcaacaattttgtcctatcggattttgccttggttttggaagaaatcaggagactttgtagtcttagctggcctcaatgcccaaaatgaaatactacatacccttgcgtttttagctggtgtgatgatttgggaacagaaaggaggtgcttacttggtcatttatctttgggcgttcatgcttgtcctctcttttgtgatgatgacgatctaccctattctaatagccccactttttaacaagttcacccctcttcctgagggtcagctgagggagaaaattgagcagctcgcttcttccctcaagtttccattgaagaagttgtttgttgttgatggatctataaggtcaagtcacagcaatgcctatatgtatggattttttaagaacaagaggattgtcctttatgatacactgatccagcagtgtacaaatgatgaggaaattgtagctgttctagcgcatgagctaggccattggaagcttaatcacagtgtgtacttatttatttctacgcagatccgtatgcttttacacttcgggggatatgctctcctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

260

Amino Acids

30.14

Weight (kDa)

8.71

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	3 cut(s)	568, 634, 736
AdeI	CACNNNGTG	1 cut(s)	718
AfaI	GTAC	3 cut(s)	50, 652, 722
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	59, 173, 538
AluBI	AGCT	8 cut(s)	23, 290, 338, 490, 511, 674, 691, 706
AluI	AGCT	8 cut(s)	23, 290, 338, 490, 511, 674, 691, 706
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	568, 634, 736
AoxI	GGCC	2 cut(s)	292, 694
ApeKI	GCWGC	2 cut(s)	86, 508
AspLEI	GCGC	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	73, 520
BccI	CCATC	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	2 cut(s)	680, 692
BisI	GCNGC	2 cut(s)	87, 509
BlsI	GCNGC	2 cut(s)	88, 510
Bpu10I	CCTNAGC	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	251
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	2 cut(s)	471, 482
BseXI	GCAGC	2 cut(s)	73, 520
BshFI	GGCC	2 cut(s)	294, 696
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	294, 696
Bsp1407I	TGTACA	2 cut(s)	48, 650
Bsp143I	GATC	4 cut(s)	429, 560, 639, 741
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	294, 696
BspCNI	CTCAG	2 cut(s)	472, 483
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	3 cut(s)	568, 634, 736
BsrDI	GCAATG	1 cut(s)	589
BsrGI	TGTACA	2 cut(s)	48, 650
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	4 cut(s)	429, 560, 639, 741
BssT1I	CCWWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	167, 716
Bst6I	CTCTTC	1 cut(s)	480
BstAUI	TGTACA	2 cut(s)	48, 650
BstC8I	GCNNGC	2 cut(s)	292, 513
BstDEI	CTNAG	3 cut(s)	286, 480, 491
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	4 cut(s)	432, 563, 642, 744
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	4 cut(s)	429, 560, 639, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 680
BstNSI	RCATGY	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	73, 520
BstX2I	RGATCY	2 cut(s)	560, 741
BstYI	RGATCY	2 cut(s)	560, 741
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	294, 696
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	3 cut(s)	635, 653, 721
Cac8I	GCNNGC	2 cut(s)	292, 513
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	685
Csp6I	GTAC	3 cut(s)	49, 651, 721
CviAII	CATG	4 cut(s)	83, 197, 400, 686
CviQI	GTAC	3 cut(s)	49, 651, 721
DdeI	CTNAG	3 cut(s)	286, 480, 491
DpnI	GATC	4 cut(s)	431, 562, 641, 743
DpnII	GATC	4 cut(s)	429, 560, 639, 741
DraIII	CACNNNGTG	1 cut(s)	718
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	251
Eco81I	CCTNAGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	4 cut(s)	86, 200, 403, 689
FatI	CATG	4 cut(s)	82, 196, 399, 685
Fnu4HI	GCNGC	2 cut(s)	87, 509
Fsp4HI	GCNGC	2 cut(s)	87, 509
FspBI	CTAG	2 cut(s)	680, 692
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	2 cut(s)	87, 509
HaeIII	GGCC	2 cut(s)	294, 696
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	4 cut(s)	86, 200, 403, 689
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	3 cut(s)	468, 651, 721
Hpy188I	TCNGA	2 cut(s)	93, 243
Hpy188III	TCNNGA	5 cut(s)	156, 170, 197, 270, 479
Hpy8I	GTNNAC	3 cut(s)	468, 651, 721
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	167, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 680
HpyF3I	CTNAG	3 cut(s)	286, 480, 491
Hsp92II	CATG	4 cut(s)	86, 200, 403, 689
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	4 cut(s)	429, 560, 639, 741
LpnPI	CCDG	5 cut(s)	255, 276, 324, 492, 656
Lsp1109I	GCAGC	2 cut(s)	73, 520
MaeI	CTAG	2 cut(s)	680, 692
MaeIII	GTNAC	2 cut(s)	205, 575
MalI	GATC	4 cut(s)	431, 562, 641, 743
MboI	GATC	4 cut(s)	429, 560, 639, 741
MboII	GAAGA	5 cut(s)	149, 274, 467, 510, 550
MflI	RGATCY	2 cut(s)	560, 741
MluCI	AATT	3 cut(s)	228, 501, 666
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	305, 359, 419, 475, 483, 486, 533, 609, 655
MseI	TTAA	4 cut(s)	147, 459, 606, 708
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	335, 680
NdeII	GATC	4 cut(s)	429, 560, 639, 741
NlaIII	CATG	4 cut(s)	86, 200, 403, 689
NmuCI	GTSAC	2 cut(s)	205, 575
NspI	RCATGY	1 cut(s)	86
PagI	TCATGA	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	88, 510
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	560, 741
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	3 cut(s)	50, 652, 722
RsaNI	GTAC	3 cut(s)	49, 651, 721
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	147, 459, 606, 708
SatI	GCNGC	2 cut(s)	87, 509
Sau3AI	GATC	4 cut(s)	429, 560, 639, 741
SchI	GAGTC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	228, 501, 666
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	2 cut(s)	680, 692
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	167, 716
TaqI	TCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	228, 501, 666
TatI	WGTACW	3 cut(s)	48, 650, 720
Tru1I	TTAA	4 cut(s)	147, 459, 606, 708
Tru9I	TTAA	4 cut(s)	147, 459, 606, 708
TscAI	CASTG	3 cut(s)	642, 653, 721
TseFI	GTSAC	2 cut(s)	205, 575
TseI	GCWGC	2 cut(s)	86, 508
Tsp45I	GTSAC	2 cut(s)	205, 575
TspDTI	ATGAA	3 cut(s)	185, 324, 388
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	3 cut(s)	642, 653, 721
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	2 cut(s)	680, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.