Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

13166587 .. 13169700

Gene Structure 3114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15083.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATCGGTTTTATGATTTTGATGTACAACTTTGAAACTTATTTGGATTTGCGCCAACATGCTGCTCTTAAACTTCCAACACTTCCTAGAACCTTGGAAGGAGTAATAAGCCAAGAAAAATTTGAGAAGTCGCGAGCCTACTGTCTTGAAAGAAGCAACTTCCATTTTGTTCACGATTTTGTGACATTACTTATGGACACAGCAATTTTGTTCTATCGGATTTTGCCTTGGTTTTGGAAGAAATCAGGAGATTTTGTGGTCTTAGCTGGCCTAAATGCCGAAAATGAAATACGGCATACCCTTTCTTTTTTAGCTGGTGTGATGATCTGGGAACAGATCACAGATCTACCATTTTCTCTCTATTCCACATTCGTGATTGAGGCTCGTCATGGTTTCAATAAGCAAACAATATGGTTGTTCTTGAAAGACATGTTAAAAGAAATGTGTCTTTCTGTTATTCTTGCCCCACCTATTGTGTCTGCAATCATTGTGATTGTACAGAATGGAGGTGCTTACTTGGTCATTTATCTTTGGACATTCATGCTTGTCCTCTCTTTTGTGATGATGACGATCTACCCTACTTTAATAGCCCCACTCTTCAACAAGTTCACCCCTCTTCCGGAGGGTCAGCTGAGGGAGAAAATTGAGAAGTTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGCAATGCCTATATGTATGGATTTTTCAAGAACAAGAGGATTGTTCTTTATGATACACTGATCCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTTTACTTATTCATTTCTAGGCAGATCCGTACACTTTTACACTTCGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCAGAGTTTCGGGTTTGACACTCAACCAGTAATTATTGGTCTCATCATATTTCAGTATACCATAACACCTATCCAGTACCTTGTAAACTTCGCTCGTAACCTTGTGAGCCGAGCTTTTGAGTTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCACTCCGAGCCAGTCTTGTTAGGCTACAGGAAGAGAACTTGTCAGCTATGAACACTGATCCTTGGTACTCGGCATATCACTATTCACATCCCCCACTTGTTGAAAGGTTGGCTGCAATCGGTGAAACAGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

425

Amino Acids

48.9

Weight (kDa)

8.71

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 210	4e-62	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	213 - 418	9.5e-47	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1022
AccII	CGCG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	643
AclWI	GGATC	4 cut(s)	733, 799, 901, 1181
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	5 cut(s)	50, 522, 913, 1043, 1196
AfiI	CCNNNNNNNGG	2 cut(s)	16, 643
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	8 cut(s)	59, 173, 421, 448, 625, 703, 772, 1232
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	1010
AlwI	GGATC	4 cut(s)	733, 799, 901, 1181
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	2 cut(s)	292, 859
ApeKI	GCWGC	2 cut(s)	86, 1241
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	625, 1262
BbvCI	CCTCAGC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	73, 1228
BccI	CCATC	1 cut(s)	716
BceAI	ACGGC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	4 cut(s)	111, 845, 857, 900
BfmI	CTRYAG	1 cut(s)	1154
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	87, 1242
BlsI	GCNGC	2 cut(s)	88, 1243
BmsI	GCATC	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	937
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	3 cut(s)	117, 251, 1190
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 643
Bse1I	ACTGG	3 cut(s)	992, 1039, 1140
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	643
BseDI	CCNNGG	3 cut(s)	117, 251, 1190
BseGI	GGATG	1 cut(s)	1216
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	2 cut(s)	16, 643
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	2 cut(s)	647, 935
BseNI	ACTGG	3 cut(s)	992, 1039, 1140
BseXI	GCAGC	2 cut(s)	73, 1228
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	294, 861
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	16, 643
BsmAI	GTCTC	1 cut(s)	1010
BsnI	GGCC	2 cut(s)	294, 861
Bso31I	GGTCTC	1 cut(s)	1010
Bsp13I	TCCGGA	1 cut(s)	643
Bsp1407I	TGTACA	2 cut(s)	48, 520
Bsp143I	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
Bsp68I	TCGCGA	1 cut(s)	157
BspANI	GGCC	2 cut(s)	294, 861
BspCNI	CTCAG	2 cut(s)	648, 936
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	850
BspPI	GGATC	4 cut(s)	733, 799, 901, 1181
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	2 cut(s)	48, 520
BsrI	ACTGG	3 cut(s)	992, 1039, 1140
BssECI	CCNNGG	3 cut(s)	117, 251, 1190
BssMI	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
BssNAI	GTATAC	1 cut(s)	1023
BssT1I	CCWWGG	3 cut(s)	117, 251, 1190
Bst1107I	GTATAC	1 cut(s)	1023
Bst4CI	ACNGT	2 cut(s)	167, 881
Bst6I	CTCTTC	4 cut(s)	626, 645, 1132, 1155
BstAUI	TGTACA	2 cut(s)	48, 520
BstC8I	GCNNGC	2 cut(s)	159, 292
BstDEI	CTNAG	4 cut(s)	286, 656, 944, 1107
BstF5I	GGATG	1 cut(s)	1216
BstFNI	CGCG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	8 cut(s)	351, 363, 370, 597, 728, 807, 909, 1189
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNSI	RCATGY	2 cut(s)	86, 457
BstSFI	CTRYAG	1 cut(s)	1154
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	73, 1228
BstX2I	RGATCY	3 cut(s)	367, 725, 906
BstYI	RGATCY	3 cut(s)	367, 725, 906
BstZ17I	GTATAC	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	294, 861
BtsCI	GGATG	1 cut(s)	1216
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	4 cut(s)	800, 818, 886, 1182
BtuMI	TCGCGA	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	159, 292
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	49, 521, 912, 1042, 1195
CviAII	CATG	5 cut(s)	83, 413, 454, 565, 851
CviQI	GTAC	5 cut(s)	49, 521, 912, 1042, 1195
DdeI	CTNAG	4 cut(s)	286, 656, 944, 1107
DpnI	GATC	8 cut(s)	350, 362, 369, 596, 727, 806, 908, 1188
DpnII	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
Eam1104I	CTCTTC	4 cut(s)	626, 645, 1132, 1155
EarI	CTCTTC	4 cut(s)	626, 645, 1132, 1155
Eco130I	CCWWGG	3 cut(s)	117, 251, 1190
Eco31I	GGTCTC	1 cut(s)	1010
EcoT14I	CCWWGG	3 cut(s)	117, 251, 1190
ErhI	CCWWGG	3 cut(s)	117, 251, 1190
FaeI	CATG	5 cut(s)	86, 416, 457, 568, 854
FatI	CATG	5 cut(s)	82, 412, 453, 564, 850
FblI	GTMKAC	1 cut(s)	1022
Fnu4HI	GCNGC	2 cut(s)	87, 1242
FokI	GGATG	1 cut(s)	1203
Fsp4HI	GCNGC	2 cut(s)	87, 1242
FspBI	CTAG	4 cut(s)	111, 845, 857, 900
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	87, 1242
GsuI	CTGGAG	1 cut(s)	937
HaeIII	GGCC	2 cut(s)	294, 861
HapII	CCGG	1 cut(s)	644
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	86, 416, 457, 568, 854
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	869
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	625, 1262
Hpy166II	GTNNAC	6 cut(s)	196, 633, 886, 914, 1023, 1051
Hpy188I	TCNGA	3 cut(s)	243, 969, 1136
Hpy8I	GTNNAC	6 cut(s)	196, 633, 886, 914, 1023, 1051
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	167, 881
HpyCH4V	TGCA	3 cut(s)	506, 816, 1244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	4 cut(s)	286, 656, 944, 1107
Hsp92II	CATG	5 cut(s)	86, 416, 457, 568, 854
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	643
Kzo9I	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
Lsp1109I	GCAGC	2 cut(s)	73, 1228
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	4 cut(s)	111, 845, 857, 900
MaeIII	GTNAC	3 cut(s)	205, 740, 1061
MalI	GATC	8 cut(s)	350, 362, 369, 596, 727, 806, 908, 1188
MboI	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
MboII	GAAGA	7 cut(s)	274, 613, 632, 675, 715, 1119, 1172
MflI	RGATCY	3 cut(s)	367, 725, 906
MluCI	AATT	5 cut(s)	143, 228, 666, 831, 996
MmeI	TCCRAC	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	643
MseI	TTAA	4 cut(s)	93, 458, 608, 873
MslI	CAYNNNNRTG	2 cut(s)	395, 747
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	1 cut(s)	644
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	845
NdeII	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
NlaIII	CATG	5 cut(s)	86, 416, 457, 568, 854
NmeAIII	GCCGAG	2 cut(s)	1100, 1178
NmuCI	GTSAC	2 cut(s)	205, 740
NruI	TCGCGA	1 cut(s)	157
NspI	RCATGY	2 cut(s)	86, 457
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	1 cut(s)	850
PciI	ACATGT	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	88, 1243
PscI	ACATGT	1 cut(s)	453
PsuI	RGATCY	3 cut(s)	367, 725, 906
PvuII	CAGCTG	1 cut(s)	655
RruI	TCGCGA	1 cut(s)	157
RsaI	GTAC	5 cut(s)	50, 522, 913, 1043, 1196
RsaNI	GTAC	5 cut(s)	49, 521, 912, 1042, 1195
RseI	CAYNNNNRTG	2 cut(s)	395, 747
SaqAI	TTAA	4 cut(s)	93, 458, 608, 873
SatI	GCNGC	2 cut(s)	87, 1242
Sau3AI	GATC	8 cut(s)	348, 360, 367, 594, 725, 804, 906, 1186
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	1 cut(s)	1154
SmiMI	CAYNNNNRTG	2 cut(s)	395, 747
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	5 cut(s)	143, 228, 666, 831, 996
SspMI	CTAG	4 cut(s)	111, 845, 857, 900
StyI	CCWWGG	3 cut(s)	117, 251, 1190
TaaI	ACNGT	2 cut(s)	167, 881
TasI	AATT	5 cut(s)	143, 228, 666, 831, 996
TatI	WGTACW	2 cut(s)	48, 520
Tru1I	TTAA	4 cut(s)	93, 458, 608, 873
Tru9I	TTAA	4 cut(s)	93, 458, 608, 873
TscAI	CASTG	4 cut(s)	807, 818, 886, 1189
TseFI	GTSAC	2 cut(s)	205, 740
TseI	GCWGC	2 cut(s)	86, 1241
Tsp45I	GTSAC	2 cut(s)	205, 740
TspDTI	ATGAA	4 cut(s)	324, 553, 883, 1193
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	4 cut(s)	807, 818, 886, 1189
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	2 cut(s)	86, 457
XmiI	GTMKAC	1 cut(s)	1022
XspI	CTAG	4 cut(s)	111, 845, 857, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.