Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

22118930 .. 22125282

Gene Structure 6353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G175500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGTTCCCCTTTTTGGAAGCTGTTATCGGTTTTATGATATTAATGTACATCTTTGAAACTTATTTGGATTTGCGCCAACATACTGCTCTCAAACTTCCAACTCTTCCCAAAACTTTGGAAGGAGTAATCGGCCAGGAAAAATTTGAGAAATCACGAGCCTACAGTCTTGATAAAAGCCACTTCCATTTTATTCATGAGTTTGTGACAATACTGATGGACTCTGCAATTTTGTTCTTTCGGGTGTTGCCTTGGTTTTGGAAGAGATCAGGAGACTTTGTGACTTTGGTTGGCCTTAATGCCGAAAATGAGATACTGCATACACTTGCATTCTTAGGTGGTGTTATGATTTGGTCACAGATTACTGATTTGCCATTCTCTCTGTACTCCACATTTGTGGTTGAGGCTCGTCATGGTTTTAATAAGCAAACAATATGGTTATTCTTCAGAGACATGGTTAAAGGAATCTGCCTTGCTGTTATTCTTGGCCCACCTATTGTGTCTGCAATCATTGTAATTGTACAGAAAGGAGGTGCTTACCTGGCCATCTATCTTTGGGCATTCATGTTTGTTCTCTCTCTTGTGATGATGACGCTCTACCCTGTTCTAATAGCTCCACTCTTTAACAAGTTCACACCTCTTCCAGAGGGTGAGCTCAGGCAGAAAATTGAGAAACTCGCTTCTTCTCTGAAGTTTCCATTGAAGAAGTTGTTTGTCGTTGATGGATCTACAAGGTCAAGTCACAGCAATGCCTACATGTATGGATTTTTTAAGAACAAGAGAATCGTTCTCTACGATACATTAATTCAACAGTGCAAAGATGATGAGGAAATTGTAGCTGTTATAGCACATGAGCTAGGCCATTGGAAGCTTAATCACACAATGTATTCATTTATTGCTGTGCAGATCCTTACATTTTTACAGTTTGGGGGATATACTCTTGTGAGAAACTCAAGTAGTCTGTTTCAAAGTTTTGGGTTTGATACCCAGCCAGTAATCATTGGACTTATCATATTTCAGCACACCATAATACCTCTCCAGCACCTAGTAAGCTTTGCTCTTAACCTTGTGAGCCGATCATTTGAATTTCAGGCTGATGCTTTTGCTAAGAAGCTTGGTTATGCCTCTGCACTTCGAGCTGGTCTTGTTAAACTACAGGAAGAGAATTTGTCCGCCATGAACACTGATCCTTGGTATTCGGCATATCACTATTCTCATCCGCCACTTGTTGAAAGGTTGGATGCAATCGATAAACCGGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

425

Amino Acids

48.46

Weight (kDa)

8.29

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1173, 1220
AclWI	GGATC	3 cut(s)	733, 901, 1181
AcoI	YGGCCR	2 cut(s)	133, 543
AcsI	RAATTY	3 cut(s)	143, 1085, 1165
AcuI	CTGAAG	2 cut(s)	430, 710
AfaI	GTAC	3 cut(s)	50, 386, 522
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	6 cut(s)	59, 703, 809, 968, 1085, 1232
AjnI	CCWGG	2 cut(s)	135, 540
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	9 cut(s)	23, 614, 655, 839, 856, 871, 1053, 1114, 1139
AluI	AGCT	9 cut(s)	23, 614, 655, 839, 856, 871, 1053, 1114, 1139
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	267, 444
AlwI	GGATC	3 cut(s)	733, 901, 1181
AoxI	GGCC	5 cut(s)	133, 292, 487, 543, 859
ApoI	RAATTY	3 cut(s)	143, 1085, 1165
AseI	ATTAAT	2 cut(s)	44, 803
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	662
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	657
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	657
BccI	CCATC	3 cut(s)	211, 554, 716
BciT130I	CCWGG	2 cut(s)	137, 542
BcoDI	GTCTC	2 cut(s)	267, 444
BfaI	CTAG	2 cut(s)	857, 1046
BfmI	CTRYAG	2 cut(s)	163, 1154
Bme1390I	CCNGG	2 cut(s)	137, 542
BmgT120I	GGNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	137, 542
BmsI	GCATC	2 cut(s)	1087, 1231
BpmI	CTGGAG	1 cut(s)	1022
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	937
Bsa29I	ATCGAT	1 cut(s)	1248
BsaJI	CCNNGG	2 cut(s)	251, 1190
BsaWI	WCCGGW	1 cut(s)	1255
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	754
BseBI	CCWGG	2 cut(s)	137, 542
BseCI	ATCGAT	1 cut(s)	1248
BseDI	CCNNGG	2 cut(s)	251, 1190
BseGI	GGATG	2 cut(s)	1216, 1246
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	1 cut(s)	670
BseNI	ACTGG	1 cut(s)	992
BseYI	CCCAGC	1 cut(s)	987
BsgI	GTGCAG	2 cut(s)	923, 1113
BshFI	GGCC	5 cut(s)	135, 294, 489, 545, 861
BshVI	ATCGAT	1 cut(s)	1248
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	1256
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	267, 444
BsmI	GAATGC	2 cut(s)	329, 560
BsnI	GGCC	5 cut(s)	135, 294, 489, 545, 861
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp1407I	TGTACA	2 cut(s)	48, 520
Bsp143I	GATC	5 cut(s)	266, 725, 906, 1076, 1186
BspACI	CCGC	2 cut(s)	1173, 1220
BspANI	GGCC	5 cut(s)	135, 294, 489, 545, 861
BspCNI	CTCAG	1 cut(s)	669
BspDI	ATCGAT	1 cut(s)	1248
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	3 cut(s)	733, 901, 1181
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	2 cut(s)	48, 520
BsrI	ACTGG	1 cut(s)	992
BssECI	CCNNGG	2 cut(s)	251, 1190
BssMI	GATC	5 cut(s)	266, 725, 906, 1076, 1186
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	251, 1190
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	137, 542
Bst4CI	ACNGT	3 cut(s)	167, 813, 924
Bst6I	CTCTTC	4 cut(s)	111, 257, 645, 1155
BstAUI	TGTACA	2 cut(s)	48, 520
BstDEI	CTNAG	3 cut(s)	334, 656, 1107
BstF5I	GGATG	2 cut(s)	1216, 1246
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	5 cut(s)	269, 728, 909, 1079, 1189
BstMAI	GTCTC	2 cut(s)	267, 444
BstMBI	GATC	5 cut(s)	266, 725, 906, 1076, 1186
BstMWI	GCNNNNNNNGC	3 cut(s)	542, 845, 1136
BstNI	CCWGG	2 cut(s)	137, 542
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	135, 540
BstSFI	CTRYAG	2 cut(s)	163, 1154
BstX2I	RGATCY	2 cut(s)	725, 906
BstXI	CCANNNNNNTGG	2 cut(s)	118, 397
BstYI	RGATCY	2 cut(s)	725, 906
Bsu15I	ATCGAT	1 cut(s)	1248
BsuRI	GGCC	5 cut(s)	135, 294, 489, 545, 861
BsuTUI	ATCGAT	1 cut(s)	1248
BtsCI	GGATG	2 cut(s)	1216, 1246
BtsIMutI	CAGTG	2 cut(s)	818, 1182
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	488
ClaI	ATCGAT	1 cut(s)	1248
CseI	GACGC	1 cut(s)	601
Csp6I	GTAC	3 cut(s)	49, 385, 521
CviAII	CATG	7 cut(s)	197, 413, 454, 565, 757, 851, 1177
CviQI	GTAC	3 cut(s)	49, 385, 521
DdeI	CTNAG	3 cut(s)	334, 656, 1107
DpnI	GATC	5 cut(s)	268, 727, 908, 1078, 1188
DpnII	GATC	5 cut(s)	266, 725, 906, 1076, 1186
EaeI	YGGCCR	2 cut(s)	133, 543
Eam1104I	CTCTTC	4 cut(s)	111, 257, 645, 1155
EarI	CTCTTC	4 cut(s)	111, 257, 645, 1155
EciI	GGCGGA	2 cut(s)	1162, 1209
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	2 cut(s)	251, 1190
Eco24I	GRGCYC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	2 cut(s)	430, 710
EcoICRI	GAGCTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	135, 540
EcoT14I	CCWWGG	2 cut(s)	251, 1190
EcoT38I	GRGCYC	1 cut(s)	657
ErhI	CCWWGG	2 cut(s)	251, 1190
FaeI	CATG	7 cut(s)	200, 416, 457, 568, 760, 854, 1180
FatI	CATG	7 cut(s)	196, 412, 453, 564, 756, 850, 1176
FokI	GGATG	2 cut(s)	1203, 1253
FriOI	GRGCYC	1 cut(s)	657
FspBI	CTAG	2 cut(s)	857, 1046
GlaI	GCGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	991
GsuI	CTGGAG	1 cut(s)	1022
HaeIII	GGCC	5 cut(s)	135, 294, 489, 545, 861
HapII	CCGG	1 cut(s)	1256
HgaI	GACGC	1 cut(s)	601
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	7 cut(s)	200, 416, 457, 568, 760, 854, 1180
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	3 cut(s)	869, 1051, 1112
HinfI	GANTC	3 cut(s)	221, 465, 783
HpaII	CCGG	1 cut(s)	1256
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	2 cut(s)	449, 690
Hpy188III	TCNNGA	5 cut(s)	156, 170, 197, 270, 644
Hpy8I	GTNNAC	1 cut(s)	633
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	167, 813, 924
HpyCH4V	TGCA	8 cut(s)	227, 319, 329, 506, 816, 904, 1130, 1244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	542, 845, 1136
HpyF3I	CTNAG	3 cut(s)	334, 656, 1107
Hsp92II	CATG	7 cut(s)	200, 416, 457, 568, 760, 854, 1180
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	266, 725, 906, 1076, 1186
LmnI	GCTCC	1 cut(s)	619
LweI	GCATC	2 cut(s)	1087, 1231
MaeI	CTAG	2 cut(s)	857, 1046
MaeIII	GTNAC	4 cut(s)	205, 280, 354, 740
MalI	GATC	5 cut(s)	268, 727, 908, 1078, 1188
MboI	GATC	5 cut(s)	266, 725, 906, 1076, 1186
MboII	GAAGA	7 cut(s)	98, 274, 436, 632, 675, 715, 1172
MflI	RGATCY	2 cut(s)	725, 906
MhlI	GDGCHC	1 cut(s)	657
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	8 cut(s)	143, 228, 516, 666, 804, 831, 1085, 1165
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	125, 1218
MnlI	CCTC	7 cut(s)	397, 524, 640, 648, 820, 1044, 1135
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MslI	CAYNNNNRTG	2 cut(s)	395, 747
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	1 cut(s)	1256
MspR9I	CCNGG	2 cut(s)	137, 542
Mva1269I	GAATGC	2 cut(s)	329, 560
MvaI	CCWGG	2 cut(s)	137, 542
MwoI	GCNNNNNNNGC	3 cut(s)	542, 845, 1136
NdeII	GATC	5 cut(s)	266, 725, 906, 1076, 1186
NlaIII	CATG	7 cut(s)	200, 416, 457, 568, 760, 854, 1180
NmuCI	GTSAC	4 cut(s)	205, 280, 354, 740
NspI	RCATGY	1 cut(s)	760
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	792
PctI	GAATGC	2 cut(s)	329, 560
PfeI	GAWTC	2 cut(s)	465, 783
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	756
PshBI	ATTAAT	2 cut(s)	44, 803
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	135, 540
PspFI	CCCAGC	1 cut(s)	987
PspGI	CCWGG	2 cut(s)	135, 540
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	725, 906
RsaI	GTAC	3 cut(s)	50, 386, 522
RsaNI	GTAC	3 cut(s)	49, 385, 521
RseI	CAYNNNNRTG	2 cut(s)	395, 747
SacI	GAGCTC	1 cut(s)	657
Sau3AI	GATC	5 cut(s)	266, 725, 906, 1076, 1186
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	137, 542
SduI	GDGCHC	1 cut(s)	657
SfaNI	GCATC	2 cut(s)	1087, 1231
SfcI	CTRYAG	2 cut(s)	163, 1154
SmiMI	CAYNNNNRTG	2 cut(s)	395, 747
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	8 cut(s)	143, 228, 516, 666, 804, 831, 1085, 1165
SsiI	CCGC	2 cut(s)	1173, 1220
SspMI	CTAG	2 cut(s)	857, 1046
SstI	GAGCTC	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	135, 540
StyI	CCWWGG	2 cut(s)	251, 1190
TaaI	ACNGT	3 cut(s)	167, 813, 924
TaqI	TCGA	2 cut(s)	1135, 1248
TasI	AATT	8 cut(s)	143, 228, 516, 666, 804, 831, 1085, 1165
TatI	WGTACW	3 cut(s)	48, 384, 520
TfiI	GAWTC	2 cut(s)	465, 783
TscAI	CASTG	2 cut(s)	818, 1189
TseFI	GTSAC	4 cut(s)	205, 280, 354, 740
Tsp45I	GTSAC	4 cut(s)	205, 280, 354, 740
TspDTI	ATGAA	4 cut(s)	185, 553, 879, 1193
TspRI	CASTG	2 cut(s)	818, 1189
VspI	ATTAAT	2 cut(s)	44, 803
XapI	RAATTY	3 cut(s)	143, 1085, 1165
XceI	RCATGY	1 cut(s)	760
XspI	CTAG	2 cut(s)	857, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.