Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

47758019 .. 47762537

Gene Structure 4519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTAGTAACTTGCCGATGAGCCCTCAGTTGGAGCAGATCCATGGTGAAATCCACGACAATTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGACTCAAGTAGACAAAGTAAACAGCTTGAGGAACTTACAGGAAAGATGAGAGAATGTAAAAGATTGATTAAAGAGTTTGATCGTGAAATGAAGGATGAGGAGGGCCGAAATACTCCTGATGTGAATAAGCAACTCAATGATGAGAAGCAATCAATGATCAAGGAGCTGAATTCATATGTACAATTGAGAAAAACGTATATGAATAGCCTTGGTAACAAGAAAGTTGAACTCTTTGATATGGGAGCAGGAGTTAGTGAACCAACAGCTGATGACAATGTTCAAATGGCATCAGCTATGTCAAATCAAGAACTAATCAATTCTGGGACGAAAACAATGGACGAGACTGACCAGGTCATTGAACGGTCTAAAAAGGTTGTTCAACAGACGATTGAAGTTGGAACTCAAACTGCTGTTACCTTGAAGGGCCAAACCGATCAAATGGGCCGCATTGTCAATGAGCTGGACACAATTCAGTTTTCAATCAAGAAGGCCACCCAGCTTGTGAAAGAGATCGGTAGGCAGGTGGCAACAGATAAATGTATCATGCTTTTCCTTCTGCTTATAGTATGTGGTGTAATAGCAATTATTATTGTGAAGGTTGTTAACCCTAACAACAAGGACATCAGGGATATCCCTGGATTGGCACCACCAGCTGCAAGGAGGCTTTTGTCTGTGAGTACTGGGGAACAGTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

268

Amino Acids

30.08

Weight (kDa)

7.64

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec20	PF03908	155 - 229	3.8e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	288, 787
AfiI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
AgsI	TTSAA	8 cut(s)	335, 389, 467, 488, 500, 529, 588, 802
AjnI	CCWGG	2 cut(s)	456, 742
AluBI	AGCT	8 cut(s)	94, 133, 274, 374, 401, 568, 607, 761
AluI	AGCT	8 cut(s)	94, 133, 274, 374, 401, 568, 607, 761
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	211, 532, 550, 597
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	211, 532, 550
AsuHPI	GGTGA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	26, 73
BbvI	GCAGC	1 cut(s)	748
BciT130I	CCWGG	2 cut(s)	458, 744
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	2 cut(s)	553, 762
BlsI	GCNGC	2 cut(s)	554, 763
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	2 cut(s)	458, 744
BmgT120I	GGNCC	3 cut(s)	211, 532, 550
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	2 cut(s)	458, 744
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	97, 155
BsaJI	CCNNGG	3 cut(s)	43, 316, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 94, 748
Bse1I	ACTGG	1 cut(s)	793
BseBI	CCWGG	2 cut(s)	458, 744
BseDI	CCNNGG	3 cut(s)	43, 316, 742
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	603
BshFI	GGCC	4 cut(s)	213, 534, 552, 599
BshNI	GGYRCC	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	213, 534, 552, 599
Bsp1286I	GDGCHC	2 cut(s)	26, 73
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	4 cut(s)	213, 534, 552, 599
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	43, 316, 742
BssMI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
BssT1I	CCWWGG	2 cut(s)	43, 316
Bst2UI	CCWGG	2 cut(s)	458, 744
Bst4CI	ACNGT	2 cut(s)	471, 798
BstAUI	TGTACA	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	6 cut(s)	42, 105, 190, 267, 544, 621
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	458, 744
BstSCI	CCNGG	2 cut(s)	456, 742
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	213, 534, 552, 599
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	619
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	211, 532, 550
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	287, 786
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	2 cut(s)	44, 652
CviQI	GTAC	2 cut(s)	287, 786
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	6 cut(s)	41, 104, 189, 266, 543, 620
DpnII	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
Eco130I	CCWWGG	2 cut(s)	43, 316
Eco24I	GRGCYC	2 cut(s)	26, 73
Eco32I	GATATC	1 cut(s)	739
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	456, 742
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	43, 316
EcoT38I	GRGCYC	2 cut(s)	26, 73
ErhI	CCWWGG	2 cut(s)	43, 316
FaeI	CATG	2 cut(s)	47, 655
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	43, 651
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	553, 762
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	2 cut(s)	26, 73
Fsp4HI	GCNGC	2 cut(s)	553, 762
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	553, 762
GsaI	CCCAGC	1 cut(s)	607
HaeIII	GGCC	4 cut(s)	213, 534, 552, 599
Hin1II	CATG	2 cut(s)	47, 655
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	1 cut(s)	110
HpaI	GTTAAC	1 cut(s)	712
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	119, 128, 365, 712
Hpy188III	TCNNGA	5 cut(s)	88, 191, 224, 413, 592
Hpy8I	GTNNAC	4 cut(s)	119, 128, 365, 712
HpyAV	CCTTC	5 cut(s)	193, 523, 589, 671, 697
HpyCH4III	ACNGT	2 cut(s)	471, 798
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	47, 655
Ksp22I	TGATCA	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
LmnI	GCTCC	3 cut(s)	34, 271, 350
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	8, 320, 520
MalI	GATC	6 cut(s)	41, 104, 189, 266, 543, 620
MboI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	26, 73
MluCI	AATT	6 cut(s)	61, 277, 290, 424, 576, 690
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	12, 484
MnlI	CCTC	6 cut(s)	36, 83, 130, 199, 202, 762
MseI	TTAA	2 cut(s)	177, 711
MspA1I	CMGCKG	2 cut(s)	374, 761
MspR9I	CCNGG	2 cut(s)	458, 744
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	458, 744
MwoI	GCNNNNNNNGC	1 cut(s)	758
NcoI	CCATGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
NlaIII	CATG	2 cut(s)	47, 655
NlaIV	GGNNCC	1 cut(s)	753
PaqCI	CACCTGC	1 cut(s)	619
PflFI	GACNNNGTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	554, 763
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	456, 742
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	456, 742
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	3 cut(s)	211, 532, 550
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	458
PvuII	CAGCTG	2 cut(s)	374, 761
RsaI	GTAC	2 cut(s)	288, 787
RsaNI	GTAC	2 cut(s)	287, 786
SaqAI	TTAA	2 cut(s)	177, 711
SatI	GCNGC	2 cut(s)	553, 762
Sau3AI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
Sau96I	GGNCC	3 cut(s)	211, 532, 550
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	458, 744
SduI	GDGCHC	2 cut(s)	26, 73
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	112, 134
SmoI	CTYRAG	2 cut(s)	112, 134
Sse9I	AATT	6 cut(s)	61, 277, 290, 424, 576, 690
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	456, 742
StyI	CCWWGG	2 cut(s)	43, 316
TaaI	ACNGT	2 cut(s)	471, 798
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	61, 277, 290, 424, 576, 690
TatI	WGTACW	2 cut(s)	286, 785
TauI	GCSGC	1 cut(s)	555
Tru1I	TTAA	2 cut(s)	177, 711
Tru9I	TTAA	2 cut(s)	177, 711
TseI	GCWGC	1 cut(s)	761
TspDTI	ATGAA	3 cut(s)	212, 270, 323
Tth111I	GACNNNGTC	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	118
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.