Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49718948 .. 49721670

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGATATTGATGTACATATTTGAAACTTACTTGGATTTGAGGCAACATTCAGCACTCAAACTTCCAACACTTCCTAAAAATTTGGAAGGAGTAATCAGCCAAGAGAAGTTTGAGAAGTCGCGAGCCTACCGTCTTGAAAGAAGCCACTTCCGTTTTCTTTGTCAGTTAGTGAGAATACTTGTGGAATCAGCAATTTTGTTCTTTAAGGTTTTGCCTTGGTTTTGGAAGAAATCAGGACACTTCGTAGATTTAGTTGGCCTCAACGAAGAAAATGAAATACTACATACCCTTGCATTTTTAGCTGGTGTGATGATTTGGTTAGAGATCACAAATTTACCATTTTCTCTCTACTCCATATTTGTGATCGAGGCCCGTCATGGTTTTAATAAGCAAACAATATGGTTATTTTTTAGTGACAAGCTTAAAGGAATTTGTCTTTCTGTTATTCTTGTCCCACCTATTGTGTCTGCAGCAATTTTAATTGTAAAGAAAGAAGGTGCTTACTCGGTCATTTATCTGTGGGTGCTCACGTTTGTTCTTTCTCTTGTGATGATGACAATCTACCCTATTCTAATAGCCCCACTCTTTCACAAGTTCACCCCTCTTCCAGAGGGTCAGCTACGAGAGAAAATTGAGACGCTTGCTTCATCCCTTGAGTTTCCGTTGAAGAAGCTGTTTGTGGTTGATGGATCCAAAAGGTCAAGTCACAGCAATGCCTATATGTATGGATTTTTTAACAACAAGAGGATTGTCCTCTATGATACACTGATTCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTGTTATAGCTCATGAGCTAGGCCATTGGAAGCGTAATCACATAGTGTACCTTTTAATTGCCAACCAGATCTGTGCACTTCTATACATTGGGGGCTATACTCTTGTGAGGAACTGGAGTAGTCTGTTTCAAAGTTTTGGGTTTCATACTAGACCACTAATCATTGCTCTCATCATATTTCAGTATGCAATAACACCTATTCAAAATCTAGTATACTTTGCTGGTAACCTTGTGAGCCGAGCTTTTGAATATCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCCTCGATTCGAGCCAGTCTGGTTAGGCTACAGGAAGAGAATTTGTCAGCTATGAATATTGATCCTTGGTACTCAGCATATCACAACACTCACCCCACGCTTGTTGAAAGGTTAGCTGCAATTGGTCAGACGGACAAGGAGGAATGCAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

414

Amino Acids

47.67

Weight (kDa)

8.87

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	15 - 198	2.9e-58	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	201 - 405	2.4e-47	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1014
AccII	CGCG	1 cut(s)	121
AclWI	GGATC	3 cut(s)	684, 697, 1145
AcsI	RAATTY	4 cut(s)	79, 331, 429, 1129
AdeI	CACNNNGTG	1 cut(s)	847
AfaI	GTAC	3 cut(s)	14, 851, 1160
AgsI	TTSAA	7 cut(s)	23, 137, 667, 932, 1004, 1049, 1196
Alw21I	GWGCWC	2 cut(s)	528, 880
Alw26I	GTCTC	1 cut(s)	629
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	3 cut(s)	684, 697, 1145
AoxI	GGCC	3 cut(s)	256, 369, 823
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	2 cut(s)	470, 1205
ApoI	RAATTY	4 cut(s)	79, 331, 429, 1129
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	589, 1172
BaeGI	GKGCMC	1 cut(s)	880
BamHI	GGATCC	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	528, 880
BbvI	GCAGC	2 cut(s)	482, 1192
BccI	CCATC	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	3 cut(s)	821, 951, 1010
BfmI	CTRYAG	2 cut(s)	468, 1118
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	2 cut(s)	471, 1206
BlsI	GCNGC	2 cut(s)	472, 1207
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	691
BmsI	GCATC	1 cut(s)	1051
BpmI	CTGGAG	1 cut(s)	937
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	215, 1154
Bse1I	ACTGG	2 cut(s)	920, 1104
Bse3DI	GCAATG	2 cut(s)	718, 963
Bse8I	GATNNNNATC	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	215, 1154
BseGI	GGATG	1 cut(s)	647
BseJI	GATNNNNATC	1 cut(s)	557
BseMI	GCAATG	2 cut(s)	718, 963
BseMII	CTCAG	1 cut(s)	1176
BseNI	ACTGG	2 cut(s)	920, 1104
BseRI	GAGGAG	1 cut(s)	1081
BseSI	GKGCMC	1 cut(s)	880
BseXI	GCAGC	2 cut(s)	482, 1192
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	258, 371, 825
BsiHKAI	GWGCWC	2 cut(s)	528, 880
BslFI	GGGAC	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	629
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	1238
BsnI	GGCC	3 cut(s)	258, 371, 825
Bsp1286I	GDGCHC	2 cut(s)	528, 880
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	5 cut(s)	324, 363, 689, 870, 1150
Bsp68I	TCGCGA	1 cut(s)	121
BspANI	GGCC	3 cut(s)	258, 371, 825
BspCNI	CTCAG	1 cut(s)	1175
BspFNI	CGCG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	691
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	3 cut(s)	684, 697, 1145
BsrDI	GCAATG	2 cut(s)	718, 963
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	920, 1104
BssECI	CCNNGG	2 cut(s)	215, 1154
BssMI	GATC	5 cut(s)	324, 363, 689, 870, 1150
BssNAI	GTATAC	1 cut(s)	1015
BssT1I	CCWWGG	2 cut(s)	215, 1154
Bst1107I	GTATAC	1 cut(s)	1015
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	609, 1119
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	123, 642
BstDEI	CTNAG	2 cut(s)	1071, 1162
BstEII	GGTNACC	1 cut(s)	1025
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	121
BstKTI	GATC	5 cut(s)	327, 366, 692, 873, 1153
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	5 cut(s)	324, 363, 689, 870, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 809
BstPI	GGTNACC	1 cut(s)	1025
BstSFI	CTRYAG	2 cut(s)	468, 1118
BstSLI	GKGCMC	1 cut(s)	880
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	482, 1192
BstX2I	RGATCY	2 cut(s)	689, 870
BstYI	RGATCY	2 cut(s)	689, 870
BstZ17I	GTATAC	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	258, 371, 825
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	2 cut(s)	782, 1243
BtsIMutI	CAGTG	3 cut(s)	764, 782, 1243
BtuMI	TCGCGA	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	123, 642
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	13, 850, 1159
CspCI	CAANNNNNGTGG	2 cut(s)	1174, 1209
CviAII	CATG	3 cut(s)	377, 815, 1242
CviQI	GTAC	3 cut(s)	13, 850, 1159
DdeI	CTNAG	2 cut(s)	1071, 1162
DpnI	GATC	5 cut(s)	326, 365, 691, 872, 1152
DpnII	GATC	5 cut(s)	324, 363, 689, 870, 1150
DraIII	CACNNNGTG	1 cut(s)	847
Eam1104I	CTCTTC	2 cut(s)	609, 1119
EarI	CTCTTC	2 cut(s)	609, 1119
Eco130I	CCWWGG	2 cut(s)	215, 1154
Eco91I	GGTNACC	1 cut(s)	1025
EcoO65I	GGTNACC	1 cut(s)	1025
EcoT14I	CCWWGG	2 cut(s)	215, 1154
ErhI	CCWWGG	2 cut(s)	215, 1154
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	3 cut(s)	380, 818, 1245
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	376, 814, 1241
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	2 cut(s)	471, 1206
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	2 cut(s)	471, 1206
FspBI	CTAG	3 cut(s)	821, 951, 1010
GluI	GCNGC	2 cut(s)	471, 1206
GsuI	CTGGAG	1 cut(s)	937
HaeIII	GGCC	3 cut(s)	258, 371, 825
HgaI	GACGC	1 cut(s)	646
Hin1II	CATG	3 cut(s)	380, 818, 1245
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	3 cut(s)	185, 769, 1096
HphI	GGTGA	2 cut(s)	589, 1172
Hpy166II	GTNNAC	4 cut(s)	597, 850, 878, 1015
Hpy188I	TCNGA	1 cut(s)	1218
Hpy188III	TCNNGA	5 cut(s)	120, 134, 234, 608, 815
Hpy8I	GTNNAC	4 cut(s)	597, 850, 878, 1015
HpyAV	CCTTC	2 cut(s)	80, 488
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	8 cut(s)	293, 470, 780, 878, 989, 1208, 1236, 1241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 809
HpyF3I	CTNAG	2 cut(s)	1071, 1162
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	3 cut(s)	380, 818, 1245
Kzo9I	GATC	5 cut(s)	324, 363, 689, 870, 1150
Lsp1109I	GCAGC	2 cut(s)	482, 1192
LweI	GCATC	1 cut(s)	1051
MaeI	CTAG	3 cut(s)	821, 951, 1010
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	3 cut(s)	413, 704, 1025
MalI	GATC	5 cut(s)	326, 365, 691, 872, 1152
MboI	GATC	5 cut(s)	324, 363, 689, 870, 1150
MboII	GAAGA	5 cut(s)	238, 278, 596, 679, 1136
MfeI	CAATTG	1 cut(s)	1209
MflI	RGATCY	2 cut(s)	689, 870
MhlI	GDGCHC	2 cut(s)	528, 880
MmeI	TCCRAC	1 cut(s)	89
MseI	TTAA	6 cut(s)	204, 384, 423, 479, 735, 857
MslI	CAYNNNNRTG	2 cut(s)	359, 711
MunI	CAATTG	1 cut(s)	1209
Mva1269I	GAATGC	1 cut(s)	1238
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	299, 809
NdeII	GATC	5 cut(s)	324, 363, 689, 870, 1150
NlaIII	CATG	3 cut(s)	380, 818, 1245
NlaIV	GGNNCC	1 cut(s)	691
NmeAIII	GCCGAG	1 cut(s)	1064
NmuCI	GTSAC	2 cut(s)	413, 704
NruI	TCGCGA	1 cut(s)	121
PagI	TCATGA	1 cut(s)	814
PctI	GAATGC	1 cut(s)	1238
PfeI	GAWTC	3 cut(s)	185, 769, 1096
PkrI	GCNGC	2 cut(s)	472, 1207
PspEI	GGTNACC	1 cut(s)	1025
PspN4I	GGNNCC	1 cut(s)	691
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	689, 870
RruI	TCGCGA	1 cut(s)	121
RsaI	GTAC	3 cut(s)	14, 851, 1160
RsaNI	GTAC	3 cut(s)	13, 850, 1159
RseI	CAYNNNNRTG	2 cut(s)	359, 711
SaqAI	TTAA	6 cut(s)	204, 384, 423, 479, 735, 857
SatI	GCNGC	2 cut(s)	471, 1206
Sau3AI	GATC	5 cut(s)	324, 363, 689, 870, 1150
Sau96I	GGNCC	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	528, 880
SfaNI	GCATC	1 cut(s)	1051
SfcI	CTRYAG	2 cut(s)	468, 1118
SmiMI	CAYNNNNRTG	2 cut(s)	359, 711
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SspI	AATATT	1 cut(s)	1147
SspMI	CTAG	3 cut(s)	821, 951, 1010
StyI	CCWWGG	2 cut(s)	215, 1154
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	3 cut(s)	366, 1094, 1099
TaqII	GACCGA	1 cut(s)	496
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	185, 769, 1096
Tru1I	TTAA	6 cut(s)	204, 384, 423, 479, 735, 857
Tru9I	TTAA	6 cut(s)	204, 384, 423, 479, 735, 857
TscAI	CASTG	3 cut(s)	771, 782, 1243
TseFI	GTSAC	2 cut(s)	413, 704
TseI	GCWGC	2 cut(s)	470, 1205
Tsp45I	GTSAC	2 cut(s)	413, 704
TspDTI	ATGAA	4 cut(s)	288, 636, 935, 1157
TspGWI	ACGGA	3 cut(s)	140, 651, 1235
TspRI	CASTG	3 cut(s)	771, 782, 1243
VneI	GTGCAC	1 cut(s)	876
XapI	RAATTY	4 cut(s)	79, 331, 429, 1129
XmiI	GTMKAC	1 cut(s)	1014
XspI	CTAG	3 cut(s)	821, 951, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.