Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

36534096 .. 36545672

Gene Structure 11577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCGGTGCCTGCTGCTATTGAGCAAACCCCTGTGGTTTTCGACTCCCAAGTCATTCAGTACCAATCCAACATCCCTTCCAAGTTCATATGGCTGGACCACGAGAAGCCGAGTCCCAACCGGCCCGACCTTCTCGCTCCAGCCATCAACCTCAGAAGCGATTCTGCCATCGTCGCGAACTTGATTCGTTCGGTCGACGAGGCCTGCAAGAAGCATGGATTCTTCCTCATTGTGAACCACGGAGTTGATCCGGTGCTTATTGCGAAAGCTCACGAGTACATGGACGTGTTCTTTGAGATGAAGCTCTCGGAGAAGCAAAGGGCTCAGAGGAAGATTGGTGAGAGCAATGGTTATTCTAGTAGCTTCACCGGCAGGTTTAACTCTAAGCTTCCATGGAAAGAAACACTTTCTTTCAGGTACTCTGCTGAGAGGCACAGCTCAACAGTCGTCAAGGACTACTTTGTGAATGTGTTGGGTGAAGATTTCAGAGAAATCGGGAAGTTCTACCAAGAATACTTGGAGGTGATTAACAAACTATCCAATGGGATACTGGAGCTACTGGGACTGAGCCTGGGAGTTGGGCGGGAGTACTTCAAAGAGTTCTACGAAGGAAACAATTCGATCATCAGGTTGAACTACGTACTATCCAATGTGCCAAAAACCAGATTTAAAACTGGGAACTGGGCCTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

231

Amino Acids

26.41

Weight (kDa)

8.5

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 146	2e-21	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	583
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	5 cut(s)	62, 278, 419, 590, 642
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	595, 634
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	6 cut(s)	269, 304, 363, 388, 438, 556
AluI	AGCT	6 cut(s)	269, 304, 363, 388, 438, 556
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	3 cut(s)	122, 201, 684
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
Asp700I	GAANNNNTTC	2 cut(s)	160, 616
AspS9I	GGNCC	3 cut(s)	97, 123, 684
AsuHPI	GGTGA	4 cut(s)	350, 358, 488, 535
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	325
BauI	CACGAG	2 cut(s)	101, 272
BccI	CCATC	2 cut(s)	152, 176
BciT130I	CCWGG	1 cut(s)	572
BciVI	GTATCC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	97, 123, 684
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	3 cut(s)	569, 684, 691
BmuI	ACTGGG	3 cut(s)	569, 684, 691
BpmI	CTGGAG	2 cut(s)	123, 572
BsaAI	YACGTR	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	238, 392, 571
BsaWI	WCCGGW	1 cut(s)	250
Bse118I	RCCGGY	3 cut(s)	4, 120, 368
Bse1I	ACTGG	4 cut(s)	555, 564, 679, 686
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	3 cut(s)	238, 392, 571
BseGI	GGATG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	4 cut(s)	166, 338, 417, 557
BseNI	ACTGG	4 cut(s)	555, 564, 679, 686
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	124, 203, 686
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	5, 121, 251, 369
BslFI	GGGAC	2 cut(s)	99, 576
BsmFI	GGGAC	2 cut(s)	99, 576
BsnI	GGCC	3 cut(s)	124, 203, 686
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	247, 621
Bsp19I	CCATGG	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	176
BspACI	CCGC	1 cut(s)	583
BspANI	GGCC	3 cut(s)	124, 203, 686
BspCNI	CTCAG	4 cut(s)	165, 337, 418, 558
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	3 cut(s)	4, 120, 368
BsrI	ACTGG	4 cut(s)	555, 564, 679, 686
BssAI	RCCGGY	3 cut(s)	4, 120, 368
BssECI	CCNNGG	3 cut(s)	238, 392, 571
BssMI	GATC	2 cut(s)	247, 621
BssSI	CACGAG	2 cut(s)	101, 272
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	2 cut(s)	101, 272
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	445, 693
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	12, 205
BstDEI	CTNAG	5 cut(s)	152, 324, 384, 426, 566
BstDSI	CCRYGG	2 cut(s)	238, 392
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	250, 624
BstMBI	GATC	2 cut(s)	247, 621
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 369
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstSNI	TACGTA	1 cut(s)	640
BstUI	CGCG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	3 cut(s)	124, 203, 686
BtgI	CCRYGG	2 cut(s)	238, 392
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	689
BtuMI	TCGCGA	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	12, 205
Cfr10I	RCCGGY	3 cut(s)	4, 120, 368
Cfr13I	GGNCC	3 cut(s)	97, 123, 684
Csp6I	GTAC	5 cut(s)	61, 277, 418, 589, 641
CviAII	CATG	3 cut(s)	215, 280, 393
CviQI	GTAC	5 cut(s)	61, 277, 418, 589, 641
DdeI	CTNAG	5 cut(s)	152, 324, 384, 426, 566
DpnI	GATC	2 cut(s)	249, 623
DpnII	GATC	2 cut(s)	247, 621
DraI	TTTAAA	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	3 cut(s)	218, 283, 396
FaiI	YATR	5 cut(s)	89, 91, 216, 281, 394
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 443, 475
FaqI	GGGAC	2 cut(s)	99, 576
FatI	CATG	3 cut(s)	214, 279, 392
FauI	CCCGC	1 cut(s)	576
FauNDI	CATATG	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	123, 572
HaeIII	GGCC	3 cut(s)	124, 203, 686
HapII	CCGG	4 cut(s)	5, 121, 251, 369
Hin1II	CATG	3 cut(s)	218, 283, 396
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	5 cut(s)	44, 112, 161, 184, 219
HpaII	CCGG	4 cut(s)	5, 121, 251, 369
HphI	GGTGA	4 cut(s)	350, 358, 488, 535
Hpy166II	GTNNAC	2 cut(s)	196, 235
Hpy188I	TCNGA	4 cut(s)	155, 310, 327, 488
Hpy188III	TCNNGA	3 cut(s)	175, 272, 496
Hpy8I	GTNNAC	2 cut(s)	196, 235
Hpy99I	CGWCG	2 cut(s)	176, 200
HpyAV	CCTTC	3 cut(s)	87, 140, 602
HpyCH4III	ACNGT	2 cut(s)	445, 693
HpyCH4IV	ACGT	2 cut(s)	285, 639
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 369
HpyF3I	CTNAG	5 cut(s)	152, 324, 384, 426, 566
HpySE526I	ACGT	2 cut(s)	285, 639
Hsp92II	CATG	3 cut(s)	218, 283, 396
Kzo9I	GATC	2 cut(s)	247, 621
LmnI	GCTCC	2 cut(s)	142, 553
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	2 cut(s)	285, 639
MalI	GATC	2 cut(s)	249, 623
MboI	GATC	2 cut(s)	247, 621
MboII	GAAGA	3 cut(s)	214, 343, 491
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	616
MlyI	GAGTC	2 cut(s)	38, 121
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	161, 193, 236, 321, 423, 514
MroXI	GAANNNNTTC	2 cut(s)	160, 616
MseI	TTAA	3 cut(s)	378, 528, 669
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	4 cut(s)	5, 121, 251, 369
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	173, 369
NcoI	CCATGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	89
NdeII	GATC	2 cut(s)	247, 621
NlaIII	CATG	3 cut(s)	218, 283, 396
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	135
NruI	TCGCGA	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	203
PdmI	GAANNNNTTC	2 cut(s)	160, 616
PfeI	GAWTC	3 cut(s)	161, 184, 219
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	38, 120
PpsI	GAGTC	2 cut(s)	38, 120
Ppu21I	YACGTR	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	97, 123, 684
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	5 cut(s)	62, 278, 419, 590, 642
RsaNI	GTAC	5 cut(s)	61, 277, 418, 589, 641
RseI	CAYNNNNRTG	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	378, 528, 669
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	247, 621
Sau96I	GGNCC	3 cut(s)	97, 123, 684
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	2 cut(s)	38, 121
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	640
Sse9I	AATT	1 cut(s)	616
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	583
SspMI	CTAG	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	445, 693
TaiI	ACGT	2 cut(s)	288, 642
TaqI	TCGA	3 cut(s)	42, 195, 620
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	616
TatI	WGTACW	2 cut(s)	276, 588
TfiI	GAWTC	3 cut(s)	161, 184, 219
Tru1I	TTAA	3 cut(s)	378, 528, 669
Tru9I	TTAA	3 cut(s)	378, 528, 669
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	76, 314
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	2 cut(s)	160, 616
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.