Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

36466745 .. 36468258

Gene Structure 1514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0254900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCAGATTGCAATTCCGTGATGCCAATGAGGATGATGTACCATCCGAGGAACTCCCACATCTCCTACTCATTCATCCACCATCATCCTTCACACGTCTCCCATCTGAAATCTGCGAAAAGTTCCGTGTCCTGAAAGCATGGGAGTCGCCACTCCCTCTAGACCAGTTCCTGATCACCCATGCACGCTCAATCCAAGCCCTACTCATTCGCGGTTTTCTTATGATTAACACAGACATCCTTCAGCAGCTACCGGCACTGAAACTCATCATAACAATCAGCGTTGGTTTGAATCACATTGACATGGCAGAGTGCCGGCGGCGTGGGATTTCTGTGACCAATGCGGGAAGTGTATACTCGGAAGATGTTGCTGATATTGCTGTTGGGTTGTACATTGATGTGCTTAGAAAACTTTCAGCAGCAGACCGGTATGTAAGACAAGGGCTTTGGAGTAGCAAAGGAGATTACCCTCTTGGTTCCAAGTTAGGTGGGAAGCGAGTTGGGATTGTTGGATTAGGAAGCATTGGCTCAGAAGTTGCTAAACGACTTGAGGCCTTTGGCTGCATCATCTCATACAATTCAAGGAGGGAAAAGCCAACTTCGTCATACCCCTTCTATTCTATCATATCTGAACTTGCAGCCAATAGTGATGCCCTCATCATCTGTTGTGCGTTAACAGAACAAACCCACCATATGATTAACAAGGAAGTCTTGGCTTCACTGGGAAGAGAGGGTGTGATTGTTAATGTAGGCCGCGGGGCAATAATTGATGAGAAAGAACTGGTGAAGTGTTTGGTGAGTGGGGAAATAAGAGGTGCTGGTTTTGATGTGTTTGAGAATGAGCCTCAAGTTCCTGAAGAGCTCTTTACATTGGACAATGTTGTTCTATCCCCACATACGGCTATTTTTACTCCGGAATCTTTGCTGAGTGTGAAAGAAGTACTAATCGCCAATGTGGAAGCTTTCTTCTTGAATAAACCTCTGGTTACTCCTGTTATGGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

335

Amino Acids

36.9

Weight (kDa)

5.4

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	57 - 332	7.5e-20	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	129 - 301	5.3e-52	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	213, 756
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	5 cut(s)	213, 319, 344, 754, 756
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	227, 876
AfaI	GTAC	3 cut(s)	42, 392, 942
AfiI	CCNNNNNNNGG	1 cut(s)	898
AflIII	ACRYGT	1 cut(s)	95
AgeI	ACCGGT	1 cut(s)	426
AgsI	TTSAA	3 cut(s)	292, 582, 973
AjiI	CACGTC	1 cut(s)	98
AluBI	AGCT	3 cut(s)	250, 862, 962
AluI	AGCT	3 cut(s)	250, 862, 962
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	3 cut(s)	3, 552, 751
ApeKI	GCWGC	4 cut(s)	247, 419, 561, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AsiGI	ACCGGT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	169, 796, 808
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	4 cut(s)	259, 431, 548, 650
BccI	CCATC	3 cut(s)	52, 91, 112
BceAI	ACGGC	1 cut(s)	915
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	6 cut(s)	248, 320, 420, 562, 639, 754
BlsI	GCNGC	6 cut(s)	249, 321, 421, 563, 640, 755
BmcAI	AGTACT	1 cut(s)	942
BmgBI	CACGTC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	478
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	3 cut(s)	13, 573, 640
BmuI	ACTGGG	1 cut(s)	731
BpuEI	CTTGAG	2 cut(s)	569, 831
BsaJI	CCNNGG	2 cut(s)	48, 754
BsaWI	WCCGGW	2 cut(s)	426, 913
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse118I	RCCGGY	3 cut(s)	253, 315, 426
Bse1I	ACTGG	3 cut(s)	166, 726, 786
BseAI	TCCGGA	1 cut(s)	913
BseDI	CCNNGG	2 cut(s)	48, 754
BseGI	GGATG	6 cut(s)	40, 44, 76, 86, 237, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMII	CTCAG	2 cut(s)	543, 917
BseNI	ACTGG	3 cut(s)	166, 726, 786
BseXI	GCAGC	4 cut(s)	259, 431, 548, 650
Bsh1236I	CGCG	2 cut(s)	213, 756
BshFI	GGCC	3 cut(s)	5, 554, 753
BshTI	ACCGGT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	864
BsiSI	CCGG	4 cut(s)	254, 316, 427, 914
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	5, 554, 753
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp13I	TCCGGA	1 cut(s)	913
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	213, 319, 344, 754, 756
BspANI	GGCC	3 cut(s)	5, 554, 753
BspCNI	CTCAG	2 cut(s)	542, 918
BspEI	TCCGGA	1 cut(s)	913
BspFNI	CGCG	2 cut(s)	213, 756
BspLI	GGNNCC	1 cut(s)	478
BspQI	GCTCTTC	1 cut(s)	852
BsrFI	RCCGGY	3 cut(s)	253, 315, 426
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	166, 726, 786
BssAI	RCCGGY	3 cut(s)	253, 315, 426
BssECI	CCNNGG	2 cut(s)	48, 754
BssMI	GATC	1 cut(s)	174
BssNAI	GTATAC	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	721, 852
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	187, 317
BstDEI	CTNAG	3 cut(s)	404, 529, 926
BstDSI	CCRYGG	1 cut(s)	754
BstF5I	GGATG	6 cut(s)	40, 44, 76, 86, 237, 1006
BstFNI	CGCG	2 cut(s)	213, 756
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstUI	CGCG	2 cut(s)	213, 756
BstV1I	GCAGC	4 cut(s)	259, 431, 548, 650
BstZ17I	GTATAC	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	5, 554, 753
BtgI	CCRYGG	1 cut(s)	754
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	6 cut(s)	40, 44, 76, 86, 237, 1006
BtsIMutI	CAGTG	2 cut(s)	257, 719
Cac8I	GCNNGC	2 cut(s)	187, 317
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr10I	RCCGGY	3 cut(s)	253, 315, 426
Cfr42I	CCGCGG	1 cut(s)	757
Csp6I	GTAC	3 cut(s)	41, 391, 941
CspAI	ACCGGT	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	3 cut(s)	141, 182, 304
CviQI	GTAC	3 cut(s)	41, 391, 941
DdeI	CTNAG	3 cut(s)	404, 529, 926
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	721, 852
EarI	CTCTTC	2 cut(s)	721, 852
Ecl136II	GAGCTC	1 cut(s)	862
Eco147I	AGGCCT	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	864
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	227, 876
EcoICRI	GAGCTC	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	864
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	144, 185, 307
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FatI	CATG	3 cut(s)	140, 181, 303
FauI	CCCGC	2 cut(s)	337, 749
FauNDI	CATATG	1 cut(s)	693
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	6 cut(s)	248, 320, 420, 562, 639, 754
FokI	GGATG	5 cut(s)	31, 47, 63, 73, 224
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	6 cut(s)	248, 320, 420, 562, 639, 754
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	6 cut(s)	248, 320, 420, 562, 639, 754
HaeIII	GGCC	3 cut(s)	5, 554, 753
HapII	CCGG	4 cut(s)	254, 316, 427, 914
Hin1II	CATG	3 cut(s)	144, 185, 307
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	960
HinfI	GANTC	3 cut(s)	146, 292, 917
HpaI	GTTAAC	1 cut(s)	675
HpaII	CCGG	4 cut(s)	254, 316, 427, 914
HphI	GGTGA	3 cut(s)	169, 796, 808
Hpy166II	GTNNAC	2 cut(s)	355, 675
Hpy188I	TCNGA	5 cut(s)	49, 109, 361, 532, 631
Hpy188III	TCNNGA	6 cut(s)	133, 161, 172, 854, 914, 970
Hpy8I	GTNNAC	2 cut(s)	355, 675
HpyAV	CCTTC	3 cut(s)	100, 251, 622
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	4 cut(s)	13, 185, 564, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	404, 529, 926
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	144, 185, 307
Kpn2I	TCCGGA	1 cut(s)	913
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	174
KspAI	GTTAAC	1 cut(s)	675
KspI	CCGCGG	1 cut(s)	757
Kzo9I	GATC	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	852
Lsp1109I	GCAGC	4 cut(s)	259, 431, 548, 650
LweI	GCATC	3 cut(s)	13, 573, 640
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	334, 985
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	4 cut(s)	374, 738, 869, 958
MhlI	GDGCHC	1 cut(s)	864
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	14, 577, 765
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	490
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	913
MroNI	GCCGGC	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	228, 674, 699, 744
MslI	CAYNNNNRTG	2 cut(s)	302, 398
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	756
MspI	CCGG	4 cut(s)	254, 316, 427, 914
MvnI	CGCG	2 cut(s)	213, 756
MwoI	GCNNNNNNNGC	1 cut(s)	377
NaeI	GCCGGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	144, 185, 307
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	852
PdiI	GCCGGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	292, 917
PinAI	ACCGGT	1 cut(s)	426
PkrI	GCNGC	6 cut(s)	249, 321, 421, 563, 640, 755
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	864
PspN4I	GGNNCC	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	172
RsaI	GTAC	3 cut(s)	42, 392, 942
RsaNI	GTAC	3 cut(s)	41, 391, 941
RseI	CAYNNNNRTG	2 cut(s)	302, 398
SacI	GAGCTC	1 cut(s)	864
SacII	CCGCGG	1 cut(s)	757
SapI	GCTCTTC	1 cut(s)	852
SaqAI	TTAA	4 cut(s)	228, 674, 699, 744
SatI	GCNGC	6 cut(s)	248, 320, 420, 562, 639, 754
Sau3AI	GATC	1 cut(s)	174
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	864
SetI	ASST	7 cut(s)	100, 252, 490, 817, 864, 964, 982
SfaNI	GCATC	3 cut(s)	13, 573, 640
Sfr303I	CCGCGG	1 cut(s)	757
SgrBI	CCGCGG	1 cut(s)	757
SmiMI	CAYNNNNRTG	2 cut(s)	302, 398
SmlI	CTYRAG	2 cut(s)	548, 846
SmoI	CTYRAG	2 cut(s)	548, 846
Sse9I	AATT	3 cut(s)	14, 577, 765
SseBI	AGGCCT	1 cut(s)	554
SsiI	CCGC	5 cut(s)	213, 319, 344, 754, 756
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	100
TasI	AATT	3 cut(s)	14, 577, 765
TatI	WGTACW	2 cut(s)	390, 940
TauI	GCSGC	2 cut(s)	322, 756
TfiI	GAWTC	2 cut(s)	292, 917
Tru1I	TTAA	4 cut(s)	228, 674, 699, 744
Tru9I	TTAA	4 cut(s)	228, 674, 699, 744
TscAI	CASTG	2 cut(s)	264, 726
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	4 cut(s)	247, 419, 561, 638
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	2 cut(s)	8, 116
TspRI	CASTG	2 cut(s)	264, 726
XbaI	TCTAGA	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.