RLG00000028038

CAAX prenyl protease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
17936010 .. 17937275
1266 bp
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UTR
Exon/CDS
Intron
RLM00000028038

Sequence Viewer

Length: 615 bp
ATGGTTTTAATAAGCGAACAATATGGTTATTCTTTAGACCTTTTTAAAAGAATATGTATCTCTGTTATCCTTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTACAGGAGGTGCTTACTAGCTTGACCATATATCTTTGGCCGTTCATGCTTGTTCACTCTCTTGTGATGATGATCATCTACCCTATTCTAATAGCCCCACTCTTTAACAAGTTCACCCCTCTTCCAGAGGGTCAGCTCAGCGAAAAAATTGAGAAGCTCTGTTCTTCCCTTGATTTTCCATTGAAGAAGCTGTTTGTCATTGACGGATCAACAAGATCAACTCACAGCAATGCCGATATGTATGGTTTTTTTAACAACAAGAGAATTGTCCTCTACGATACACTGATTCAGCAGTGCAAAAATGATGAGGAAGTTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATTACACAATCCGTATGCTTTTAAAATTCGGGGGATATGAAGAGAATTTGTCAGCTATGTACATCGATCCATGGTACTCGGCATATCACCGTTCTCATCCCCCGCTTGTTCAAAGGTTGGTTGCAATTGGTGATGTGGACAAGAAAGCAGACTGA

Protein Analysis

205

Amino Acids

23.39

Weight (kDa)

6.29

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48_N PF16491 12 - 72 2.4e-14 CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48 PF01435 75 - 162 9e-23 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 563
AclWI GGATC 2 cut(s) 319, 521
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 485, 505
AfaI GTAC 3 cut(s) 108, 521, 536
AgsI TTSAA 2 cut(s) 289, 572
AluBI AGCT 9 cut(s) 126, 241, 262, 295, 425, 434, 442, 457, 515
AluI AGCT 9 cut(s) 126, 241, 262, 295, 425, 434, 442, 457, 515
AlwI GGATC 2 cut(s) 319, 521
AoxI GGCC 2 cut(s) 143, 445
ApoI RAATTY 2 cut(s) 485, 505
AsuHPI GGTGA 3 cut(s) 211, 539, 602
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BceAI ACGGC 1 cut(s) 130
BclI TGATCA 1 cut(s) 177
BfaI CTAG 3 cut(s) 123, 431, 443
BlpI GCTNAGC 1 cut(s) 242
Bpu1102I GCTNAGC 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 525
BsaBI GATNNNNATC 2 cut(s) 176, 179
BsaJI CCNNGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 2 cut(s) 176, 179
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 1 cut(s) 556
BseJI GATNNNNATC 2 cut(s) 176, 179
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 256
BshFI GGCC 2 cut(s) 145, 447
BshVI ATCGAT 1 cut(s) 525
BsnI GGCC 2 cut(s) 145, 447
Bsp1407I TGTACA 2 cut(s) 106, 519
Bsp143I GATC 4 cut(s) 177, 311, 320, 526
Bsp1720I GCTNAGC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 530
BspACI CCGC 1 cut(s) 563
BspANI GGCC 2 cut(s) 145, 447
BspCNI CTCAG 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 525
BspHI TCATGA 1 cut(s) 436
BspPI GGATC 2 cut(s) 319, 521
BsrDI GCAATG 1 cut(s) 340
BsrGI TGTACA 2 cut(s) 106, 519
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 4 cut(s) 177, 311, 320, 526
BssT1I CCWWGG 1 cut(s) 530
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 2 cut(s) 231, 495
BstAUI TGTACA 2 cut(s) 106, 519
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 1 cut(s) 556
BstKTI GATC 4 cut(s) 180, 314, 323, 529
BstMBI GATC 4 cut(s) 177, 311, 320, 526
BstMWI GCNNNNNNNGC 2 cut(s) 151, 431
Bsu15I ATCGAT 1 cut(s) 525
BsuRI GGCC 2 cut(s) 145, 447
BsuTUI ATCGAT 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 556
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 386, 404
CciI TCATGA 1 cut(s) 436
ClaI ATCGAT 1 cut(s) 525
Csp6I GTAC 3 cut(s) 107, 520, 535
CviAII CATG 3 cut(s) 151, 437, 531
CviQI GTAC 3 cut(s) 107, 520, 535
DdeI CTNAG 1 cut(s) 242
DpnI GATC 4 cut(s) 179, 313, 322, 528
DpnII GATC 4 cut(s) 177, 311, 320, 526
DraI TTTAAA 2 cut(s) 46, 483
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 231, 495
EarI CTCTTC 2 cut(s) 231, 495
Eco130I CCWWGG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 3 cut(s) 154, 440, 534
FatI CATG 3 cut(s) 150, 436, 530
FauI CCCGC 1 cut(s) 570
FbaI TGATCA 1 cut(s) 177
FokI GGATG 1 cut(s) 543
FspBI CTAG 3 cut(s) 123, 431, 443
HaeIII GGCC 2 cut(s) 145, 447
Hin1II CATG 3 cut(s) 154, 440, 534
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 1 cut(s) 391
HphI GGTGA 3 cut(s) 211, 539, 602
Hpy166II GTNNAC 3 cut(s) 160, 219, 598
Hpy188III TCNNGA 2 cut(s) 230, 437
Hpy8I GTNNAC 3 cut(s) 160, 219, 598
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 3 cut(s) 92, 402, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 431
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 3 cut(s) 154, 440, 534
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 4 cut(s) 177, 311, 320, 526
LpnPI CCDG 2 cut(s) 95, 243
MaeI CTAG 3 cut(s) 123, 431, 443
MalI GATC 4 cut(s) 179, 313, 322, 528
MboI GATC 4 cut(s) 177, 311, 320, 526
MboII GAAGA 4 cut(s) 218, 261, 301, 512
MfeI CAATTG 1 cut(s) 585
MluCI AATT 7 cut(s) 102, 252, 369, 460, 485, 505, 585
MnlI CCTC 5 cut(s) 106, 226, 234, 386, 406
MseI TTAA 6 cut(s) 8, 45, 210, 357, 459, 482
MslI CAYNNNNRTG 1 cut(s) 333
MunI CAATTG 1 cut(s) 585
MwoI GCNNNNNNNGC 2 cut(s) 151, 431
NcoI CCATGG 1 cut(s) 530
NdeII GATC 4 cut(s) 177, 311, 320, 526
NlaIII CATG 3 cut(s) 154, 440, 534
NmeAIII GCCGAG 1 cut(s) 518
PagI TCATGA 1 cut(s) 436
PfeI GAWTC 1 cut(s) 391
RsaI GTAC 3 cut(s) 108, 521, 536
RsaNI GTAC 3 cut(s) 107, 520, 535
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 6 cut(s) 8, 45, 210, 357, 459, 482
Sau3AI GATC 4 cut(s) 177, 311, 320, 526
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 7 cut(s) 102, 252, 369, 460, 485, 505, 585
SsiI CCGC 1 cut(s) 563
SspMI CTAG 3 cut(s) 123, 431, 443
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 525
TasI AATT 7 cut(s) 102, 252, 369, 460, 485, 505, 585
TatI WGTACW 2 cut(s) 106, 519
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 6 cut(s) 8, 45, 210, 357, 459, 482
Tru9I TTAA 6 cut(s) 8, 45, 210, 357, 459, 482
TscAI CASTG 2 cut(s) 393, 404
TspDTI ATGAA 2 cut(s) 139, 513
TspGWI ACGGA 2 cut(s) 324, 461
TspRI CASTG 2 cut(s) 393, 404
XapI RAATTY 2 cut(s) 485, 505
XspI CTAG 3 cut(s) 123, 431, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.